Skip to content

Issues: ModelSEED/ProbModelSEED

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

31 Open 21 Closed
31 Open 21 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Discrepancy between Reaction biochemistry table and reactions upon reconstruction
#112 opened Mar 31, 2017 by ctseto
4
Template selection during model reconstruction
#111 opened Mar 31, 2017 by ctseto
4
Issues with reconstruction on custom media
#99 opened Jun 7, 2016 by nconrad
Issues with copy_model
#95 opened Oct 20, 2015 by nconrad
1
Add gapfilled reactions to model on integrate important
#91 opened Sep 3, 2015 by nconrad UI 2.0 Beta Push
1
Need users' models from old modelseed? important
#90 opened Aug 28, 2015 by nconrad UI 2.0 Beta Push
put gapfill reactions in model object on integrating important
#89 opened Aug 28, 2015 by nconrad UI 2.0 Beta Push
Need published and reference models important
#88 opened Aug 28, 2015 by nconrad UI 2.0 Beta Push
1
Curate model templates
#86 opened Aug 20, 2015 by mmundy42
4 tasks
Switch to new model templates
Create model templates using extended biochemistry
#85 opened Aug 20, 2015 by mmundy42
8 tasks
Switch to new model templates
Switch to new extended biochemistry
#84 opened Aug 20, 2015 by mmundy42
3 tasks
Switch to new model templates
copy_model is overwriting
#82 opened Aug 18, 2015 by nconrad
3
list_models() and get_model() differences
#81 opened Aug 13, 2015 by mmundy42
1
odd empty hash returned by copy_model
#80 opened Aug 13, 2015 by nconrad
Differences between media and patric-media folder in workspace
#79 opened Aug 12, 2015 by mmundy42
Default charge of reactions containing unknown structures
#48 opened Jul 17, 2015 by samseaver
4
get_fba (FBA Table) API Method
#43 opened Jul 14, 2015 by nconrad
3
reconstruct/gapfill/fba response important
#39 opened Jul 10, 2015 by nconrad UI 2.0 Beta Push
4
Gram positive and gram negative model templates are swapped
#37 opened Jul 9, 2015 by mmundy42
Different genes IDs link to the same page
#36 opened Jul 9, 2015 by jplfaria
@cshenry
2
Gapfills should always start from the same base model
#34 opened Jun 30, 2015 by mmundy42
Unrecognized reference format error
#32 opened Jun 30, 2015 by mmundy42
list_models is quite slow
#26 opened Jun 22, 2015 by nconrad
5
Model edits are not taken into account when retrieving a model from workspace
#24 opened Jun 17, 2015 by mmundy42
Add probabilistic annotation algorithm
#23 opened Jun 17, 2015 by mmundy42
1
ProTip! Exclude everything labeled bug with -label:bug.