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  1. scHPF scHPF Public

    Single-cell Hierarchical Poisson Factorization

    Python 64 10

  2. cluster_diffex2018 cluster_diffex2018 Public

    scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers

    Python 18 8

  3. umap_projection umap_projection Public

    Python 2 4

  4. DropSeqPipeline8 DropSeqPipeline8 Public

    Python 2

  5. proteomics2021 proteomics2021 Public

    Python 1

  6. Neurite_FISH_Quant Neurite_FISH_Quant Public

    Python code for quantification of FISH puncta in neurites

    Jupyter Notebook 1 1

Repositories

Showing 10 of 13 repositories
  • consensus_scHPF_wrapper Public
    simslab/consensus_scHPF_wrapper’s past year of commit activity
    Python 1 2 0 1 Updated Jul 11, 2024
  • dna10x Public

    Pipeline for processing scDNA-seq data obtained using the 10x Genomics scATAC-seq kit.

    simslab/dna10x’s past year of commit activity
    Python 0 1 1 0 Updated Feb 25, 2023
  • pbmc_citeseq Public
    simslab/pbmc_citeseq’s past year of commit activity
    0 0 0 0 Updated Jan 3, 2023
  • SCOPEseq2 Public
    simslab/SCOPEseq2’s past year of commit activity
    Python 0 0 0 0 Updated Dec 17, 2022
  • scHPF Public

    Single-cell Hierarchical Poisson Factorization

    simslab/scHPF’s past year of commit activity
    Python 64 BSD-2-Clause 10 7 1 Updated Aug 9, 2022
  • DropSeqPipeline8 Public
    simslab/DropSeqPipeline8’s past year of commit activity
    Python 2 0 0 0 Updated Apr 11, 2022
  • riboPLATE-seq Public

    Notebook and associated scripts for interpretation of riboPLATE-seq data

    simslab/riboPLATE-seq’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Nov 15, 2021
  • Neurite_FISH_Quant Public

    Python code for quantification of FISH puncta in neurites

    simslab/Neurite_FISH_Quant’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Oct 14, 2021
  • cluster_diffex2018 Public

    scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers

    simslab/cluster_diffex2018’s past year of commit activity
    Python 18 MIT 8 0 0 Updated Sep 28, 2021
  • demux10x Public
    simslab/demux10x’s past year of commit activity
    Python 0 0 0 0 Updated Aug 4, 2021
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