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    13 repositories

    • consensus_scHPF_wrapper

      Public
      Python
      •2•1•0•1•Updated Jul 11, 2024Jul 11, 2024

    • dna10x

      Public
      Pipeline for processing scDNA-seq data obtained using the 10x Genomics scATAC-seq kit.
      Python
      •1•0•2•0•Updated Feb 25, 2023Feb 25, 2023

    • pbmc_citeseq

      Public
      0•0•0•0•Updated Jan 3, 2023Jan 3, 2023

    • SCOPEseq2

      Public
      Python
      •0•0•0•0•Updated Dec 17, 2022Dec 17, 2022

    • scHPF

      Public
      Single-cell Hierarchical Poisson Factorization
      dimensionality-reductionvariational-bayesscrna-seq
      Python
      •
      BSD 2-Clause "Simplified" License
      •10•65•7•1•Updated Aug 9, 2022Aug 9, 2022

    • DropSeqPipeline8

      Public
      Python
      •0•2•0•0•Updated Apr 11, 2022Apr 11, 2022

    • riboPLATE-seq

      Public
      Notebook and associated scripts for interpretation of riboPLATE-seq data
      Jupyter Notebook
      •1•0•0•0•Updated Nov 15, 2021Nov 15, 2021

    • Neurite_FISH_Quant

      Public
      Python code for quantification of FISH puncta in neurites
      Jupyter Notebook
      •1•2•0•0•Updated Oct 14, 2021Oct 14, 2021

    • cluster_diffex2018

      Public
      scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers
      Python
      •
      MIT License
      •8•18•0•0•Updated Sep 28, 2021Sep 28, 2021

    • demux10x

      Public
      Python
      •0•0•0•0•Updated Aug 4, 2021Aug 4, 2021

    • proteomics2021

      Public
      Python
      •0•1•0•0•Updated Jun 2, 2021Jun 2, 2021

    • PhenoGraph

      Public
      Subpopulation detection in high-dimensional single-cell data
      Python
      •
      MIT License
      •70•0•0•0•Updated Nov 13, 2020Nov 13, 2020

    • umap_projection

      Public
      Python
      •4•2•0•0•Updated Mar 7, 2020Mar 7, 2020