updates dockerfile to include vep

sib-swiss · Dec 10, 2024 · 875e322 · 875e322
1 parent 2e3835a
commit 875e322
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diff --git a/Docker/Dockerfile b/Docker/Dockerfile
@@ -22,7 +22,7 @@ RUN mamba env create \
     -n ngs-tools \
     -f environment.yml
 
-RUN mamba init 
+RUN . ~/.bashrc && conda activate ngs-tools && vep_install -a p --PLUGINS all
 
 COPY settings.json /config/data/User/
 COPY keybindings.json /config/data/User/

diff --git a/Docker/environment.yml b/Docker/environment.yml
@@ -11,3 +11,4 @@ dependencies:
   - cnvkit>=0.9.10
   - bcftools
   - multiqc
+  - ensembl-vep=113