Add support for pod5 files generated via dorado basecaller #368
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…ado-basecalled-nanopore-structure' into feature/dm-1003-dorado-basecalled-nanopore-structure
...in/groovy/life/qbic/datamodel/instruments/OxfordNanoporeInstrumentOutputDoradoMinimal.groovy
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...ain/groovy/life/qbic/datamodel/datasets/datastructure/folders/nanopore/Pod5SkipFolder.groovy
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...in/groovy/life/qbic/datamodel/datasets/datastructure/folders/nanopore/Fast5SkipFolder.groovy
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src/main/groovy/life/qbic/datamodel/datasets/OxfordNanoporeMeasurement.groovy
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wow-such-code
requested changes
Nov 3, 2023
wow-such-code
approved these changes
Nov 3, 2023
Steffengreiner
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feature/dm-1003-dorado-basecalled-nanopore-structure
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This was referenced Nov 3, 2023
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What was changed
Apparently the new Nanopore machines generate pod5 files instead of fast5 files dependent on the employed basecaller. Since the partner labs are updating their machines it's necessary to account for the newly valid minimal filetree structure