Merge branch 'main' into acc-tree

.github/workflows/CI.yml

@@ -91,6 +91,7 @@ jobs:
           name: coverage-data-${{ matrix.python-version }}
           path: .coverage
           if-no-files-found: ignore
+          include-hidden-files: true
 
   # Only run accessibility tests on the latest Python version (3.12) and Ubuntu
   a11y-tests:
@@ -178,9 +179,11 @@ jobs:
           runs: 3 # Multiple runs to reduce variance
 
   coverage:
-    name: "check coverage"
+    name: "Check coverage"
     needs: run-pytest
     runs-on: ubuntu-latest
+    # avoid running this on schedule, releases, or workflow_call
+    if: github.event.workflow_run.event != 'schedule' && github.event.workflow_run.event != 'release' && github.event.workflow_run.event != 'workflow_call'
     permissions:
       contents: write
       pull-requests: write
@@ -221,8 +224,6 @@ jobs:
       - name: "Coverage comment 💬"
         uses: py-cov-action/python-coverage-comment-action@v3
         id: coverage_comment
-        # avoid running this on schedule or releases
-        if: github.event.workflow_run.event != 'schedule' && github.event.workflow_run.event != 'release'
         with:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
 

.github/workflows/publish.yml

@@ -20,6 +20,10 @@ jobs:
   # calls our general CI workflow (tests, build docs, etc.)
   tests:
     uses: ./.github/workflows/CI.yml
+    # needed for the coverage action
+    permissions:
+      contents: write
+      pull-requests: write
 
   build-package:
     name: "Build & verify PST package"

.gitignore

@@ -105,6 +105,7 @@ envs/
 .nodeenv/
 .yarn-packages
 node_modules/
+bun.lockb
 
 # Editors
 .vscode

.pre-commit-config.yaml

@@ -27,7 +27,7 @@ repos:
       - id: black
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: "v0.5.6"
+    rev: "v0.6.3"
     hooks:
       - id: ruff
 
@@ -38,13 +38,13 @@ repos:
         args: [--py37-plus]
 
   - repo: https://github.com/Riverside-Healthcare/djLint
-    rev: v1.34.1
+    rev: v1.35.2
     hooks:
       - id: djlint-jinja
         types_or: ["html"]
 
   - repo: https://github.com/PyCQA/doc8
-    rev: v1.1.1
+    rev: v1.1.2
     hooks:
       - id: doc8
 
@@ -59,7 +59,7 @@ repos:
       - id: remove-metadata
 
   - repo: https://github.com/thibaudcolas/pre-commit-stylelint
-    rev: v16.8.1
+    rev: v16.9.0
     hooks:
       - id: stylelint
         # automatically fix .scss files where possible

docs/conf.py

@@ -11,10 +11,11 @@
 from pathlib import Path
 from typing import Any, Dict
 
-import pydata_sphinx_theme
 from sphinx.application import Sphinx
 from sphinx.locale import _
 
+import pydata_sphinx_theme
+
 sys.path.append(str(Path(".").resolve()))
 
 # -- Project information -----------------------------------------------------

docs/examples/pydata.ipynb

@@ -48,9 +48,9 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "import pandas as pd\n",
-    "import numpy as np\n",
     "import ipywidgets as widgets\n",
+    "import numpy as np\n",
+    "import pandas as pd\n",
     "from IPython.display import display\n",
     "\n",
     "tab = widgets.Tab()\n",
@@ -122,9 +122,8 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "import plotly.io as pio\n",
     "import plotly.express as px\n",
-    "import plotly.offline as py\n",
+    "import plotly.io as pio\n",
     "\n",
     "pio.renderers.default = \"notebook\"\n",
     "\n",
@@ -149,6 +148,7 @@
    "outputs": [],
    "source": [
     "import xarray as xr\n",
+    "\n",
     "data = xr.DataArray(\n",
     "        np.random.randn(2, 3),\n",
     "        dims=(\"x\", \"y\"),\n",