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    6 repositories

    • log_verbosity

      Public
      Recipe for controlling log level via argparse and Python
      Python
      •0•1•0•0•Updated Oct 17, 2019Oct 17, 2019

    • dl-biodb

      Public
      Repo for work surrounding downloadable biological databases
      0•1•1•0•Updated Aug 29, 2017Aug 29, 2017

    • filter_contigs

      Public
      Simple BioPython toy to filter contigs based on size. Used highly-Pythonic "generator" design - ideal for adaptation to stream processing.
      Python
      •
      Other
      •3•8•0•0•Updated Aug 3, 2017Aug 3, 2017

    • header_renamer

      Public
      Rename FASTQ headers into a fake Illumina format.
      Python
      •
      Other
      •0•0•0•0•Updated Apr 13, 2017Apr 13, 2017

    • spades_stats

      Public
      Python
      •
      Other
      •1•0•0•0•Updated Jan 20, 2017Jan 20, 2017

    • sra_exp

      Public
      Short script to lookup SRA Experiment accessions from SRA Run accessions
      Shell
      •0•1•0•0•Updated Oct 25, 2016Oct 25, 2016