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@kcri-tz Kilimanjaro Clinical Research Institute

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    16 repositories

    • kcri-cge-bap

      Public
      KCRI CGE Bacterial Analysis Pipeline
      bioinformaticspipelineassemblyngsamr
      Python
      •
      Apache License 2.0
      •6•6•0•0•Updated Sep 2, 2024Sep 2, 2024

    • resfinder

      Public
      Slimmed down version of the CGE ResFinder source repo
      Python
      •
      Other
      •0•0•0•0•Updated Aug 27, 2024Aug 27, 2024

    • virulencefinder

      Public
      Slimmed down version of the CGE VirulenceFinder source repo
      Python
      •0•4•0•0•Updated Jul 22, 2024Jul 22, 2024

    • sans

      Public
      C++
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Nov 2, 2023Nov 2, 2023

    • medaka

      Public
      Sequence correction provided by ONT Research
      Python
      •
      Other
      •74•0•0•0•Updated Sep 27, 2023Sep 27, 2023

    • kraken2

      Public
      The second version of the Kraken taxonomic sequence classification system
      C++
      •
      MIT License
      •271•0•0•0•Updated Aug 13, 2023Aug 13, 2023

    • mlst

      Public
      Slimmed down version of the CGE MLST source repo
      Python
      •0•1•0•0•Updated Feb 25, 2023Feb 25, 2023

    • hpc.kcri.it

      Public
      The KCRI HPC web site
      HTML
      •
      Other
      •0•0•0•0•Updated Dec 16, 2022Dec 16, 2022

    • cgmlstfinder

      Public
      Slimmed down version of the CGE cgMLSTFinder source repo
      Python
      •1•2•0•0•Updated Oct 13, 2022Oct 13, 2022

    • bcl-convert-deb

      Public
      Repack bcl-convert in a deb package
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Jun 29, 2022Jun 29, 2022

    • salmonellatypefinder

      Public
      Slimmed down version of the CGE SalmonellaTypeFinder source repo
      Python
      •0•0•0•0•Updated Jun 21, 2022Jun 21, 2022

    • .github

      Public
      Holds the github.com/kcri-tz profile readme
      0•0•0•0•Updated Apr 27, 2022Apr 27, 2022

    • pmlst

      Public
      Slimmed down version of the CGE pMLST source repo
      Python
      •1•0•0•0•Updated Apr 8, 2022Apr 8, 2022

    • plasmidfinder

      Public
      Python
      •0•3•0•0•Updated Apr 8, 2022Apr 8, 2022

    • kmerfinder

      Public
      Slimmed down version of the CGE KmerFinder source repo
      Python
      •0•0•0•0•Updated Apr 8, 2022Apr 8, 2022

    • choleraefinder

      Public
      Slimmed down version of the CGE CholeraeFinder source repo
      Python
      •0•0•0•0•Updated Apr 8, 2022Apr 8, 2022