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@kcri-tz

Kilimanjaro Clinical Research Institute

KCRI Genomics and Bioinformatics Projects
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Public KCRI Genomics and Bioinformatics Projects

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  1. kcri-cge-bap kcri-cge-bap Public

    KCRI CGE Bacterial Analysis Pipeline

    Python 6 6

  2. virulencefinder virulencefinder Public

    Slimmed down version of the CGE VirulenceFinder source repo

    Python 4

  3. plasmidfinder plasmidfinder Public

    Python 3

  4. cgmlstfinder cgmlstfinder Public

    Slimmed down version of the CGE cgMLSTFinder source repo

    Python 2 1

  5. sans sans Public

    C++ 2

  6. mlst mlst Public

    Slimmed down version of the CGE MLST source repo

    Python 1

Repositories

Showing 10 of 16 repositories
  • kcri-cge-bap Public

    KCRI CGE Bacterial Analysis Pipeline

    kcri-tz/kcri-cge-bap’s past year of commit activity
    Python 6 Apache-2.0 6 0 0 Updated Sep 2, 2024
  • resfinder Public

    Slimmed down version of the CGE ResFinder source repo

    kcri-tz/resfinder’s past year of commit activity
    Python 0 0 0 0 Updated Aug 27, 2024
  • virulencefinder Public

    Slimmed down version of the CGE VirulenceFinder source repo

    kcri-tz/virulencefinder’s past year of commit activity
    Python 4 0 0 0 Updated Jul 22, 2024
  • sans Public
    kcri-tz/sans’s past year of commit activity
    C++ 2 GPL-3.0 0 0 0 Updated Nov 2, 2023
  • medaka Public Forked from nanoporetech/medaka

    Sequence correction provided by ONT Research

    kcri-tz/medaka’s past year of commit activity
    Python 0 74 0 0 Updated Sep 27, 2023
  • kraken2 Public Forked from DerrickWood/kraken2

    The second version of the Kraken taxonomic sequence classification system

    kcri-tz/kraken2’s past year of commit activity
    C++ 0 MIT 274 0 0 Updated Aug 13, 2023
  • mlst Public

    Slimmed down version of the CGE MLST source repo

    kcri-tz/mlst’s past year of commit activity
    Python 1 0 0 0 Updated Feb 25, 2023
  • hpc.kcri.it Public

    The KCRI HPC web site

    kcri-tz/hpc.kcri.it’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 16, 2022
  • cgmlstfinder Public

    Slimmed down version of the CGE cgMLSTFinder source repo

    kcri-tz/cgmlstfinder’s past year of commit activity
    Python 2 1 0 0 Updated Oct 13, 2022
  • bcl-convert-deb Public

    Repack bcl-convert in a deb package

    kcri-tz/bcl-convert-deb’s past year of commit activity
    1 CC0-1.0 0 0 0 Updated Jun 29, 2022
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