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Fix unite motifs #4

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Fix unite motifs #4

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Roialfassi
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yael1994 and others added 30 commits May 19, 2021 14:37
@yael1994 @shacharmo
generate a map of all the bc
f6329ce
@yael1994 @shacharmo
change the list of colors
883f75a
@yael1994 @shacharmo
last changes
96faaa2
@yael1994 @shacharmo
change the default values
f63417a
@yael1994 @shacharmo
names and spaces fix
9b99cab
@yael1994 @shacharmo
swap values
06ed787
@yael1994 @shacharmo
fix comments
106a3ae
@shacharmo
Added log scale to unite heatmap tool
83eb49c
@shacharmo
Merge pull request #25 from Webiks/tool_all_data_RF
4ea4fd6 
Tool all data rf
@shacharmo
Fixed typeos
63112a8
@yael1994
add json file for read filteration phase
37ad77b
@yael1994
changes in the cmd
3609553
@yael1994
check the scema of the json file without load twice
9b1476f
@yael1994
Merge branch 'controlled_shuffles_tools' into validation_files
6db177b
@yael1994
Merge branch 'reads_filtration_change_seq_length' into RF_parallel
9525e37
@shacharmo
Merge pull request #20 from Webiks/RF_parallel
f29afc4 
Rf parallel
@yael1994
call the json valid scema from load table
220f138
@yael1994
fix conflict
ce5e848
@shacharmo
Fixed file validations including imports
074abf4
@shacharmo
Merge pull request #14 from Webiks/validation_files
36b2073 
Validation files
@yael1994
part 1 cross exp
8816ab8
@yael1994
change the place of file AWS stop machines from tools to auxiliaries
16107f0
@yael1994
Merge branch 'controlled_shuffles_tools' into change_place_stop_machines
c45e662
@yael1994
support mapitope
b5a2f3b
@yael1994
remove import src_dir
40cc915
@yael1994
Merge branch 'change_place_stop_machines' of https://github.com/Webik…
f7ef3d9 
…s/IgomeProfiling into change_place_stop_machines
@shacharmo
Merge pull request #27 from Webiks/change_place_stop_machines
1a6a549 
change the place of file AWS stop machines from tools to auxiliaries
@yael1994
phase 1 and 2
c38eabf
@yael1994
commit
2a3cc96
@yael1994
Merge branch 'controlled_shuffles_tools' of https://github.com/Webiks…
5063b12 
…/IgomeProfiling into controlled_shuffles_tools
yael1994 and others added 30 commits May 2, 2022 15:51
@yael1994
remove normalization if the hits already normalize by rpm
906b8cc
@yael1994
sorted the cluster to combine by number of samples, unique peptides, rpm
ffa9a27
@yael1994
add spaces
03b9271
@yael1994
add flag of sample2group
09e5a4f
@yael1994
script for join samples
18b6ffd
@yael1994
add flag for type sort, more readability, user floor instead of round
432c46a
@yael1994
change name of parameters and there explanation
3a10996
@yael1994
fix the script by the new requests
465df5a
@yael1994
remove the letter probability end
f5e7c38
@yael1994
change the path of the wsl tutorial
723bedd
@yael1994
Merge pull request #63 from Webiks/input_change_script_meme
ad8f414 
fix the script by the new requests
@shacharmo
Merge pull request #64 from Webiks/path_install_wsl_readme
2cf7db3 
change the path of the wsl tutorial
@shacharmo
Merge pull request #62 from Webiks/order_of_sort_motifs_BC
83f34ca 
Order of sort motifs bc
@shacharmo
Merge pull request #61 from Webiks/connect_positive_motifs_to_pipeline
d5fdf38 
Connect positive motifs to pipeline
@yael1994
group in the file barcode 2 sample
53f57e1
@yael1994
remove not relevent function
57b0f05
@yael1994
fix spaces
433dbca
@yael1994
add new script for summary reads in one csv file
bbb9106
@yael1994
add flag that keep cluster of BC that build from minimun number of sa…
02f23ec 
…mples
@yael1994
fix typo
d632f0f
@shacharmo
Merge pull request #67 from Webiks/flag_num_sample_build_cluster
8c98b84 
Flag num sample build cluster
@shacharmo
Merge pull request #65 from Webiks/summary_log_csv
16fff30 
add new script for summary reads in one csv file
@shacharmo
Merge pull request #66 from Webiks/join_samples_to_groups
b87fb41 
Join samples to groups
@Roialfassi
changed the order of the samples
5a595b5 
The motif samples were by sort_by_num_samples, sort_by_unique_memebers, sort_by_cluster_size

now its sort_by_num_samples, sort_by_cluster_size , sort_by_unique_memebers
when unique members goes from low to high
@shacharmo
Merge pull request #68 from Webiks/changeOrderMotifs
c8e19e7 
changed the order of the samples
@Roialfassi
Update unite_motifs_of_biological_condition.py
f8e6295
@Roialfassi
Update worker_entrypoint.sh
4a24542
@Roialfassi
updated entrypoint
082648c 
fixed bug of biological condition type value
@Roialfassi
Update unite_motifs_of_biological_condition.py
aba7152
@Roialfassi
Update unite_motifs_of_biological_condition.py
5f6b79e
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3 participants
@Roialfassi @yael1994 @shacharmo