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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 8 3

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 8 3

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 227 repositories
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    oicr-gsi/djerba’s past year of commit activity
    Python 8 GPL-3.0 3 2 3 Updated Jul 24, 2024
  • shesmu Public

    Decision-driven action launching system

    oicr-gsi/shesmu’s past year of commit activity
    Java 8 MIT 3 0 7 Updated Jul 22, 2024
  • vidarr Public

    Analysis provenance tracking server

    oicr-gsi/vidarr’s past year of commit activity
    Java 1 MIT 1 0 1 Updated Jul 19, 2024
  • bclconvert Public

    Workflow to process a run directory through Dragen bclconvert

    oicr-gsi/bclconvert’s past year of commit activity
    WDL 0 0 0 0 Updated Jul 19, 2024
  • dragen-bclconvert Public
    oicr-gsi/dragen-bclconvert’s past year of commit activity
    WDL 0 0 0 0 Updated Jul 19, 2024
  • dimsum Public

    QC Tracking dashboard

    oicr-gsi/dimsum’s past year of commit activity
    Java 1 0 0 1 Updated Jul 17, 2024
  • bcl2fastq Public

    Workflow for Illumina's bcl2fastq

    oicr-gsi/bcl2fastq’s past year of commit activity
    C++ 0 1 0 1 Updated Jul 15, 2024
  • ichorCNA Public

    workflow for estimating the fraction of tumour in cell-free DNA from sWGS

    oicr-gsi/ichorCNA’s past year of commit activity
    WDL 0 1 0 1 Updated Jul 12, 2024
  • bamMergePreprocessing Public

    WDL workflow to filter, merge, mark duplicates, indel realign and base quality score recalibrate groups of related (e.g. by library, donor, project) lane level alignments

    oicr-gsi/bamMergePreprocessing’s past year of commit activity
    WDL 0 GPL-2.0 1 0 2 Updated Jul 12, 2024
  • bwamem2 Public

    workflow for bwa-men2

    oicr-gsi/bwamem2’s past year of commit activity
    WDL 0 0 0 1 Updated Jul 11, 2024
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