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v1.1.8 - Augmented Akita Patch [2024-06-20]

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@jfy133 jfy133 released this 20 Jun 15:59
1.1.8
5d3ee55
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Learn about vigilant mode.

Added

  • #487 Updated to nf-core pipeline template v2.14.1 (added by @jfy133)

Fixed

  • #484 Improved input validation to immediately fail if run accession IDs within a given sample ID are not unique (❤️ to @sofstam for reporting, fixed by @jfy133)
  • #491 Added flag to publish intermediate bracken files (❤️ to @ewissel for reporting, fixed by @sofstam and @jfy133)
  • #489 Fix KrakenUniq classified reads output format mismatch (❤️ to @SannaAb for reporting, fixed by @jfy133)
  • #495 Stop TAXPASTA failures when profiles do not have exact compositionality (fixes by @Midnighter, @jfy133)

Dependencies

Tool Previous version New version
KMCP 0.9.1 0.9.4
TAXPASTA 0.6.1 0.7.0

Deprecated

  • #492 Removed --kmcp_mode parameter from KMCP to allow per database specification by setting in db_params in database sheet (fixed by @jfy133)

Contributors

Midnighter, jfy133, and 3 other contributors
Assets 2
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