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DSL2+#312

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bentsherman wants to merge 26 commits intodevnf-core/fetchngs:devfrom dsl2-plusnf-core/fetchngs:dsl2-plusCopy head branch name to clipboard

+143-276

Commits

Commits on Apr 27, 2024

• Replace ext/publishDir with params/publish definition

  Show description for f531c5d
  bentsherman

  committed
  f531c5d

• Update config to comply with strict parser

  Show description for 836ace2
  bentsherman

  committed
  836ace2

• Use param schemas as source of truth, convert to YAML

  Show description for 25a1fb5
  bentsherman

  committed
  25a1fb5

• Use eval output, topic channels to collect tool versions

  Show description for 505806a
  bentsherman

  committed
  505806a

Commits on May 19, 2024

• Refactor params as workflow inputs

  Show description for 4401d29
  bentsherman

  committed
  4401d29

• Update workflow output definition

  Show description for 1b2ad00
  bentsherman

  committed
  1b2ad00

• Update workflow params definition

  Show description for 4ab2ddc
  bentsherman

  committed
  4ab2ddc

• Add workflow output schema

  Show description for 39971b6
  bentsherman

  committed
  39971b6

Commits on Jun 10, 2024

• Rename schema_params.yml to schema_inputs.yml

  Show description for a05928c
  bentsherman

  committed
  a05928c

• Remove trailing slashes from target names

  Show description for 081dbc0
  bentsherman

  committed
  081dbc0

Commits on Jun 11, 2024

• Add wrapper workflow for ASPERA_CLI

  Show description for ff54921
  bentsherman

  committed
  ff54921

Commits on Jun 21, 2024

• Initialize ch_fastq

  Show description for b69bb74
  bentsherman

  committed
  b69bb74

Commits on Jun 26, 2024

• Remove import statements

  Show description for 6996724
  bentsherman

  committed
  6996724

Commits on Sep 23, 2024

• Fix warnings

  Show description for faf3af4
  bentsherman

  committed
  faf3af4

• Update workflow outputs (second preview)

  Show description for f9385f3
  bentsherman

  committed
  f9385f3

Commits on Nov 2, 2024

• Refactor output targets to samples and versions

  Show description for a65146e
  bentsherman

  committed
  a65146e

Commits on Dec 4, 2024

• Revert unrelated changes

  Show description for e567043
  bentsherman

  committed
  e567043

Commits on Dec 5, 2024

• Revert unrelated changes

  Show description for 885128a
  bentsherman

  committed
  885128a

• Merge branch 'dev' into dsl2-plus

  Show description for 595ac02
  bentsherman

  committed
  595ac02

• Use Nextflow 24.10

  Show description for 0bbc665
  bentsherman

  committed
  0bbc665

• FIx failing test

  Show description for 8e91e21
  bentsherman

  committed
  8e91e21

• Fix failing tests

  Show description for 768702d
  bentsherman

  committed
  768702d

• minor edits

  Show description for 8f97ac6
  bentsherman

  committed
  8f97ac6

• minor edits

  Show description for 26c43af
  bentsherman

  committed
  26c43af

• Fix workflow outputs

  Show description for 9e33149
  bentsherman

  committed
  9e33149

Commits on Dec 10, 2024

• Fix dynamic publish path

  Show description for 08a3361
  bentsherman

  committed
  08a3361