Skip to content

Issues: nf-core/fetchngs

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

23 Open 60 Closed
23 Open 60 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

1.11.0 works while 1.12.0 fails for apptainer+wget ( wget: unable to resolve host address 'ftp.sra.ebi.ac.uk' ) bug Something isn't working
#328 opened Dec 9, 2024 by lindenb
Incorrect fastq paths in scRNA-seq sample sheet bug Something isn't working
#326 opened Nov 29, 2024 by huldash
Update some modeles for TES compliance bug Something isn't working
#318 opened Sep 13, 2024 by vsmalladi
1
@vsmalladi
SRATOOLS_FASTERQDUMP failing due to missing fastq file bug Something isn't working
#317 opened Jul 24, 2024 by edg1983
11
Support for CNBG enhancement Improvement for existing functionality
#315 opened Jul 1, 2024 by nathaniel-mahieu
DDBJ study ids (DRP123456) do not map correctly bug Something isn't working
#314 opened Jul 1, 2024 by awalsh17
Support for GSA accessions enhancement Improvement for existing functionality
#313 opened May 30, 2024 by millerh1
SRA file links deprecated bug Something isn't working
#301 opened Mar 7, 2024 by tiendu
3
wget host address error bug Something isn't working
#291 opened Feb 23, 2024 by mniederhuber
9
Merge technical replicates (SRR1 + SRR2 -> SRX) enhancement Improvement for existing functionality
#270 opened Feb 6, 2024 by millerh1
Add ability to download more than 2 FastQ files via FTP and Aspera enhancement Improvement for existing functionality
#260 opened Jan 30, 2024 by drpatelh
3
check out extensions for input files bug Something isn't working
#256 opened Jan 25, 2024 by maxulysse
3
Use nf-test for input validation enhancement Improvement for existing functionality
#254 opened Jan 18, 2024 by drpatelh
FEAT: Pass scientific name as input to download the data
#235 opened Nov 2, 2023 by maxulysse
SRAtools download seems to insert paired-end suffix into workdir path bug Something isn't working
#221 opened Oct 16, 2023 by dmalzl 1.13.0
1
6
Add compatibility with sarek samplesheet enhancement Improvement for existing functionality
#196 opened Sep 21, 2023 by FriederikeHanssen
Deal with accessions with non-existing files enhancement Improvement for existing functionality
#139 opened Mar 24, 2023 by bmlab-sg 1.10.0
@drpatelh
6
eutils rate limits exceeded (with relatively small input set of accessions) bug Something isn't working
#117 opened Oct 13, 2022 by adf-ncgr
4
Use ffq to fetch id metadata enhancement Improvement for existing functionality
#110 opened Jul 21, 2022 by drpatelh
@robsyme
Can SRA responses be trapped and reported in a user-friendly manner? enhancement Improvement for existing functionality
#108 opened Jul 14, 2022 by telatin
1
add --save_merged_fastq for merging technical repeats to fetchngs enhancement Improvement for existing functionality
#95 opened Jun 7, 2022 by ojziff
5
Allow a prepared ENA metadata samplesheet as input enhancement Improvement for existing functionality
#77 opened Mar 7, 2022 by Midnighter
1
Check if running offline enhancement Improvement for existing functionality
#18 opened Jun 29, 2021 by drpatelh
1
ProTip! Find all open issues with in progress development work with linked:pr.