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Use paths instead of tags as matrix variable #976

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Use paths instead of tags as matrix variable

Use paths instead of tags as matrix variable #976

Triggered via pull request March 4, 2024 11:14
@adamrtalbotadamrtalbot
opened #300
adamrtalbot:use_paths_as_matrix_for_efficient_testing
Status Failure
Total duration 1m 17s
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ci.yml

on: pull_request
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Matrix: test
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59 errors and 1 warning
modules/local/sra_to_samplesheet/tests/main.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
modules/local/multiqc_mappings_config/tests/main.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
modules/local/sra_runinfo_to_ftp/tests/main.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
modules/local/sra_ids_to_runinfo/tests/main.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_initialisation.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
modules/nf-core/sratools/prefetch/tests/main.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
modules/nf-core/sratools/fasterqdump/tests/main.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
modules/nf-core/untar/tests/main.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_completion.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
modules/local/aspera_cli/tests/main.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
tests/main.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
workflows/sra/tests/sra_download_method_sratools.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
workflows/sra/tests/sra_skip_fastq_download.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
modules/nf-core/sratools/fasterqdump/tests/main.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
modules/nf-core/sratools/prefetch/tests/main.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
workflows/sra/tests/sra_download_method_aspera.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
modules/local/sra_ids_to_runinfo/tests/main.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
modules/local/multiqc_mappings_config/tests/main.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
modules/local/sra_fastq_ftp/tests/main.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
modules/local/aspera_cli/tests/main.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_initialisation.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
modules/local/sra_runinfo_to_ftp/tests/main.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_completion.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
tests/main.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
workflows/sra/tests/sra_download_method_sratools.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
modules/local/sra_to_samplesheet/tests/main.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
workflows/sra/tests/sra_download_method_aspera.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.function.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
workflows/sra/tests/sra_skip_fastq_download.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
modules/local/sra_fastq_ftp/tests/main.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
modules/nf-core/untar/tests/main.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
workflows/sra/tests/main.nf.test docker NF-23.04
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.function.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
workflows/sra/tests/main.nf.test docker NF-latest-everything
Unable to resolve action `actions/checkout@4`, unable to find version `4`. Unable to resolve action `nf-core/setup-nextflow@2`, unable to find version `2`
confirm-pass
Process completed with exit code 1.
Check for changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.