Remove params.outdir from tests where required and update snapshots #965
Triggered via pull request
February 29, 2024 09:37
drpatelh
Status
Cancelled
Total duration
2m 18s
Artifacts
–
Annotations
88 errors and 37 warnings
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PIPELINE_INITIALISATION docker NF-23.04
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PIPELINE_COMPLETION docker NF-23.04
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PIPELINE_INITIALISATION docker NF-latest-everything
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SRA_IDS_TO_RUNINFO docker NF-23.04
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SRA_IDS_TO_RUNINFO docker NF-23.04
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MULTIQC_MAPPINGS_CONFIG docker NF-latest-everything
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SRATOOLS_FASTERQDUMP docker NF-latest-everything
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SRA_TO_SAMPLESHEET docker NF-latest-everything
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SRA_TO_SAMPLESHEET docker NF-23.04
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SRA_TO_SAMPLESHEET docker NF-23.04
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CUSTOM_SRATOOLSNCBISETTINGS docker NF-latest-everything
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CUSTOM_SRATOOLSNCBISETTINGS docker NF-latest-everything
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SRATOOLS_PREFETCH docker NF-23.04
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SRATOOLS_PREFETCH docker NF-23.04
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UTILS_NEXTFLOW_PIPELINE docker NF-latest-everything
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SRATOOLS_PREFETCH docker NF-23.04
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UTILS_NEXTFLOW_PIPELINE docker NF-latest-everything
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SRATOOLS_PREFETCH docker NF-latest-everything
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SRA_IDS_TO_RUNINFO docker NF-latest-everything
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SRA_IDS_TO_RUNINFO docker NF-latest-everything
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SRA_FASTQ_FTP docker NF-latest-everything
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SRATOOLS_FASTERQDUMP docker NF-23.04
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SRATOOLS_FASTERQDUMP docker NF-23.04
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ASPERA_CLI docker NF-23.04
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ASPERA_CLI docker NF-23.04
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ASPERA_CLI docker NF-23.04
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UNTAR docker NF-latest-everything
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UNTAR docker NF-latest-everything
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SRA docker NF-23.04
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SRA docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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MULTIQC_MAPPINGS_CONFIG docker NF-23.04
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MULTIQC_MAPPINGS_CONFIG docker NF-23.04
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MULTIQC_MAPPINGS_CONFIG docker NF-23.04
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SRA_FASTQ_FTP docker NF-23.04
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SRA_FASTQ_FTP docker NF-23.04
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SRA_FASTQ_FTP docker NF-23.04
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UTILS_NEXTFLOW_PIPELINE docker NF-23.04
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UTILS_NEXTFLOW_PIPELINE docker NF-23.04
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UTILS_NEXTFLOW_PIPELINE docker NF-23.04
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FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-23.04
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FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-23.04
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FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-latest-everything
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ASPERA_CLI docker NF-latest-everything
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ASPERA_CLI docker NF-latest-everything
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FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-latest-everything
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ASPERA_CLI docker NF-latest-everything
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UTILS_NFCORE_PIPELINE docker NF-23.04
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UTILS_NFCORE_PIPELINE docker NF-23.04
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UTILS_NFCORE_PIPELINE docker NF-23.04
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UTILS_NFCORE_PIPELINE docker NF-latest-everything
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UTILS_NFCORE_PIPELINE docker NF-latest-everything
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UTILS_NFCORE_PIPELINE docker NF-latest-everything
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UNTAR docker NF-23.04
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UNTAR docker NF-23.04
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SRA docker NF-latest-everything
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SRA docker NF-latest-everything
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SRA docker NF-latest-everything
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SRA_RUNINFO_TO_FTP docker NF-23.04
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SRA_RUNINFO_TO_FTP docker NF-23.04
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SRA_RUNINFO_TO_FTP docker NF-23.04
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CUSTOM_SRATOOLSNCBISETTINGS docker NF-23.04
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CUSTOM_SRATOOLSNCBISETTINGS docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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CUSTOM_SRATOOLSNCBISETTINGS docker NF-23.04
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SRA_RUNINFO_TO_FTP docker NF-latest-everything
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SRA_RUNINFO_TO_FTP docker NF-latest-everything
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SRA_RUNINFO_TO_FTP docker NF-latest-everything
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Check for changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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PIPELINE_INITIALISATION docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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PIPELINE_INITIALISATION docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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PIPELINE_COMPLETION docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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PIPELINE_COMPLETION docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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PIPELINE_INITIALISATION docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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PIPELINE_INITIALISATION docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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PIPELINE_COMPLETION docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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PIPELINE_COMPLETION docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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SRA_IDS_TO_RUNINFO docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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MULTIQC_MAPPINGS_CONFIG docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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SRATOOLS_FASTERQDUMP docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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SRA_TO_SAMPLESHEET docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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SRA_TO_SAMPLESHEET docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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CUSTOM_SRATOOLSNCBISETTINGS docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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SRATOOLS_PREFETCH docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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UTILS_NEXTFLOW_PIPELINE docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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SRATOOLS_PREFETCH docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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SRA_IDS_TO_RUNINFO docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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SRA_FASTQ_FTP docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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SRATOOLS_FASTERQDUMP docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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ASPERA_CLI docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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UNTAR docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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SRA docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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MULTIQC_MAPPINGS_CONFIG docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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SRA_FASTQ_FTP docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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UTILS_NEXTFLOW_PIPELINE docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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ASPERA_CLI docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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UTILS_NFCORE_PIPELINE docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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UTILS_NFCORE_PIPELINE docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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UNTAR docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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SRA docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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SRA_RUNINFO_TO_FTP docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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CUSTOM_SRATOOLSNCBISETTINGS docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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SRA_RUNINFO_TO_FTP docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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