Workflow output definition #964
bentshermanAnnotations
145 errors and 37 warnings
|
Run with profile test:
Run with profile test#L1
Assertion failed:
assert workflow.success
| |
workflow false
|
|
PIPELINE docker NF-latest-everything
Process completed with exit code 1.
|
|
PIPELINE docker NF-latest-everything
Process completed with exit code 1.
|
|
Run with profile test:
Run with profile test#L1
Assertion failed:
assert workflow.success
| |
workflow false
|
|
PIPELINE docker NF-23.04
Process completed with exit code 1.
|
|
PIPELINE docker NF-23.04
Process completed with exit code 1.
|
|
Parameters: --download_method aspera:
Parameters: --download_method aspera#L1
Assertion failed:
2 of 3 assertions failed
|
|
ASPERA_CLI docker NF-23.04
Process completed with exit code 1.
|
|
ASPERA_CLI docker NF-23.04
Process completed with exit code 1.
|
|
Parameters: --download_method aspera:
Parameters: --download_method aspera#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method sratools:
Parameters: --download_method sratools#L1
Assertion failed:
2 of 3 assertions failed
|
|
ASPERA_CLI docker NF-latest-everything
Process completed with exit code 1.
|
|
ASPERA_CLI docker NF-latest-everything
Process completed with exit code 1.
|
|
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-23.04
Process completed with exit code 1.
|
|
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-23.04
Process completed with exit code 1.
|
|
Parameters: --download_method sratools:
Parameters: --download_method sratools#L1
Assertion failed:
2 of 3 assertions failed
|
|
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-latest-everything
Process completed with exit code 1.
|
|
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-latest-everything
Process completed with exit code 1.
|
|
Parameters: --nf_core_pipeline rnaseq:
Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...:
.devcontainer#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline viralrecon:
Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline atacseq:
Parameters: --nf_core_pipeline atacseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline taxprofiler:
Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: default:
Parameters: default#L1
Assertion failed:
2 of 3 assertions failed
|
|
SRA_FASTQ_FTP docker NF-23.04
Process completed with exit code 1.
|
|
SRA_FASTQ_FTP docker NF-23.04
Process completed with exit code 1.
|
|
Parameters: --nf_core_pipeline rnaseq:
Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...:
.devcontainer#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline viralrecon:
Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline atacseq:
Parameters: --nf_core_pipeline atacseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline taxprofiler:
Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: default:
Parameters: default#L1
Assertion failed:
2 of 3 assertions failed
|
|
SRA_FASTQ_FTP docker NF-latest-everything
Process completed with exit code 1.
|
|
SRA_FASTQ_FTP docker NF-latest-everything
Process completed with exit code 1.
|
|
Parameters: --nf_core_pipeline rnaseq:
Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --skip_fastq_download:
Parameters: --skip_fastq_download#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method aspera:
Parameters: --download_method aspera#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline viralrecon:
Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline atacseq:
Parameters: --nf_core_pipeline atacseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline taxprofiler:
Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: default:
Parameters: default#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method sratools:
Parameters: --download_method sratools#L1
Assertion failed:
2 of 3 assertions failed
|
|
SRA docker NF-23.04
Process completed with exit code 1.
|
|
SRA docker NF-23.04
Process completed with exit code 1.
|
|
Parameters: --nf_core_pipeline rnaseq:
Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...:
.devcontainer#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --skip_fastq_download:
Parameters: --skip_fastq_download#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method aspera:
Parameters: --download_method aspera#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline viralrecon:
Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline atacseq:
Parameters: --nf_core_pipeline atacseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline taxprofiler:
Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: default:
Parameters: default#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method sratools:
Parameters: --download_method sratools#L1
Assertion failed:
2 of 3 assertions failed
|
|
SRA docker NF-latest-everything
Process completed with exit code 1.
|
|
SRA docker NF-latest-everything
Process completed with exit code 1.
|
|
Parameters: --nf_core_pipeline rnaseq:
Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...:
.devcontainer#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method aspera:
Parameters: --download_method aspera#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline viralrecon:
Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline atacseq:
Parameters: --nf_core_pipeline atacseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline taxprofiler:
Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: default:
Parameters: default#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method sratools:
Parameters: --download_method sratools#L1
Assertion failed:
2 of 3 assertions failed
|
|
SRA_RUNINFO_TO_FTP docker NF-23.04
Process completed with exit code 1.
|
|
SRA_RUNINFO_TO_FTP docker NF-23.04
Process completed with exit code 1.
|
|
Parameters: --nf_core_pipeline rnaseq:
Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...:
.devcontainer#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --skip_fastq_download:
Parameters: --skip_fastq_download#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method aspera:
Parameters: --download_method aspera#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline viralrecon:
Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline atacseq:
Parameters: --nf_core_pipeline atacseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline taxprofiler:
Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: default:
Parameters: default#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method sratools:
Parameters: --download_method sratools#L1
Assertion failed:
2 of 3 assertions failed
|
|
MULTIQC_MAPPINGS_CONFIG docker NF-23.04
Process completed with exit code 1.
|
|
MULTIQC_MAPPINGS_CONFIG docker NF-23.04
Process completed with exit code 1.
|
|
Parameters: --nf_core_pipeline rnaseq:
Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...:
.devcontainer#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --skip_fastq_download:
Parameters: --skip_fastq_download#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method aspera:
Parameters: --download_method aspera#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline viralrecon:
Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline atacseq:
Parameters: --nf_core_pipeline atacseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline taxprofiler:
Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: default:
Parameters: default#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method sratools:
Parameters: --download_method sratools#L1
Assertion failed:
2 of 3 assertions failed
|
|
Should run without failures:
Should run without failures#L1
Assertion failed:
2 of 2 assertions failed
|
|
Parameters: --nf_core_pipeline rnaseq:
Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...:
.devcontainer#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --skip_fastq_download:
Parameters: --skip_fastq_download#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method aspera:
Parameters: --download_method aspera#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline viralrecon:
Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline atacseq:
Parameters: --nf_core_pipeline atacseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline taxprofiler:
Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: default:
Parameters: default#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method sratools:
Parameters: --download_method sratools#L1
Assertion failed:
2 of 3 assertions failed
|
|
Should run without failures:
Should run without failures#L1
Assertion failed:
2 of 2 assertions failed
|
|
SRA_TO_SAMPLESHEET docker NF-latest-everything
Process completed with exit code 1.
|
|
SRA_TO_SAMPLESHEET docker NF-latest-everything
Process completed with exit code 1.
|
|
SRA_TO_SAMPLESHEET docker NF-23.04
Process completed with exit code 1.
|
|
SRA_TO_SAMPLESHEET docker NF-23.04
Process completed with exit code 1.
|
|
Parameters: --nf_core_pipeline rnaseq:
Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...:
.devcontainer#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --skip_fastq_download:
Parameters: --skip_fastq_download#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method aspera:
Parameters: --download_method aspera#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline viralrecon:
Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline atacseq:
Parameters: --nf_core_pipeline atacseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline taxprofiler:
Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: default:
Parameters: default#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method sratools:
Parameters: --download_method sratools#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline rnaseq:
Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...:
.devcontainer#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --skip_fastq_download:
Parameters: --skip_fastq_download#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method aspera:
Parameters: --download_method aspera#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline viralrecon:
Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline atacseq:
Parameters: --nf_core_pipeline atacseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline taxprofiler:
Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: default:
Parameters: default#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method sratools:
Parameters: --download_method sratools#L1
Assertion failed:
2 of 3 assertions failed
|
|
SRA_IDS_TO_RUNINFO docker NF-23.04
Process completed with exit code 1.
|
|
SRA_IDS_TO_RUNINFO docker NF-23.04
Process completed with exit code 1.
|
|
SRA_RUNINFO_TO_FTP docker NF-latest-everything
Process completed with exit code 1.
|
|
SRA_RUNINFO_TO_FTP docker NF-latest-everything
Process completed with exit code 1.
|
|
Parameters: --nf_core_pipeline rnaseq:
Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...:
.devcontainer#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --skip_fastq_download:
Parameters: --skip_fastq_download#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method aspera:
Parameters: --download_method aspera#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline viralrecon:
Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline atacseq:
Parameters: --nf_core_pipeline atacseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline taxprofiler:
Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: default:
Parameters: default#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method sratools:
Parameters: --download_method sratools#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline rnaseq:
Parameters: --nf_core_pipeline rnaseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...:
.devcontainer#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --skip_fastq_download:
Parameters: --skip_fastq_download#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method aspera:
Parameters: --download_method aspera#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline viralrecon:
Parameters: --nf_core_pipeline viralrecon#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline atacseq:
Parameters: --nf_core_pipeline atacseq#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --nf_core_pipeline taxprofiler:
Parameters: --nf_core_pipeline taxprofiler#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: default:
Parameters: default#L1
Assertion failed:
2 of 3 assertions failed
|
|
Parameters: --download_method sratools:
Parameters: --download_method sratools#L1
Assertion failed:
2 of 3 assertions failed
|
|
SRA_IDS_TO_RUNINFO docker NF-latest-everything
Process completed with exit code 1.
|
|
SRA_IDS_TO_RUNINFO docker NF-latest-everything
Process completed with exit code 1.
|
|
MULTIQC_MAPPINGS_CONFIG docker NF-latest-everything
Process completed with exit code 1.
|
|
MULTIQC_MAPPINGS_CONFIG docker NF-latest-everything
Process completed with exit code 1.
|
|
confirm-pass
Process completed with exit code 1.
|
|
Check for changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
PIPELINE_INITIALISATION docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
PIPELINE_COMPLETION docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
PIPELINE_COMPLETION docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
PIPELINE_INITIALISATION docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
PIPELINE docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
UTILS_NFVALIDATION_PLUGIN docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
UTILS_NFVALIDATION_PLUGIN docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
UTILS_NFCORE_PIPELINE docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
UTILS_NEXTFLOW_PIPELINE docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
PIPELINE docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
UTILS_NFCORE_PIPELINE docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
ASPERA_CLI docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
UTILS_NEXTFLOW_PIPELINE docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
CUSTOM_SRATOOLSNCBISETTINGS docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SRATOOLS_PREFETCH docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
ASPERA_CLI docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
CUSTOM_SRATOOLSNCBISETTINGS docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SRATOOLS_PREFETCH docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SRATOOLS_FASTERQDUMP docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
UNTAR docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
UNTAR docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SRA_FASTQ_FTP docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SRATOOLS_FASTERQDUMP docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SRA_FASTQ_FTP docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SRA docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SRA docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SRA_RUNINFO_TO_FTP docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
MULTIQC_MAPPINGS_CONFIG docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SRA_TO_SAMPLESHEET docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SRA_TO_SAMPLESHEET docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SRA_IDS_TO_RUNINFO docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SRA_RUNINFO_TO_FTP docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
SRA_IDS_TO_RUNINFO docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
|
MULTIQC_MAPPINGS_CONFIG docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|