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DSL2+ #1055

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DSL2+

DSL2+ #1055

Triggered via pull request December 5, 2024 22:27
@bentshermanbentsherman
synchronize #312
dsl2-plus
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Total duration 6m 12s
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ci.yml

on: pull_request
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85 errors and 60 warnings
workflows/sra/tests/sra_download_method_aspera.nf.test | 24.10.2 | docker
Process completed with exit code 1.
workflows/sra/tests/sra_download_method_aspera.nf.test | 24.10.2 | docker
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modules/local/sra_runinfo_to_ftp/tests/main.nf.test | 24.10.2 | docker
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modules/local/sra_runinfo_to_ftp/tests/main.nf.test | 24.10.2 | docker
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workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | 24.10.2 | docker
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workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | 24.10.2 | docker
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workflows/sra/tests/sra_skip_fastq_download.nf.test | 24.10.2 | docker
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workflows/sra/tests/sra_skip_fastq_download.nf.test | 24.10.2 | docker
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modules/local/sra_runinfo_to_ftp/tests/main.nf.test | latest-everything | docker
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modules/local/sra_runinfo_to_ftp/tests/main.nf.test | latest-everything | docker
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workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | latest-everything | docker
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workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | latest-everything | docker
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workflows/sra/tests/main.nf.test | 24.10.2 | docker
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workflows/sra/tests/main.nf.test | 24.10.2 | docker
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workflows/sra/tests/sra_download_method_sratools.nf.test | 24.10.2 | docker
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workflows/sra/tests/sra_download_method_sratools.nf.test | 24.10.2 | docker
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workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | 24.10.2 | docker
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workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | 24.10.2 | docker
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modules/nf-core/untar/tests/main.nf.test | 24.10.2 | docker
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modules/nf-core/untar/tests/main.nf.test | 24.10.2 | docker
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modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test | 24.10.2 | docker
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modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test | 24.10.2 | docker
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modules/local/sra_ids_to_runinfo/tests/main.nf.test | 24.10.2 | docker
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modules/local/sra_ids_to_runinfo/tests/main.nf.test | 24.10.2 | docker
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workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | 24.10.2 | docker
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workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | 24.10.2 | docker
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workflows/sra/tests/main.nf.test | latest-everything | docker
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workflows/sra/tests/main.nf.test | latest-everything | docker
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workflows/sra/tests/sra_download_method_sratools.nf.test | latest-everything | docker
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workflows/sra/tests/sra_download_method_sratools.nf.test | latest-everything | docker
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workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | latest-everything | docker
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workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | latest-everything | docker
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workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | 24.10.2 | docker
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workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | 24.10.2 | docker
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modules/nf-core/sratools/fasterqdump/tests/main.nf.test | 24.10.2 | docker
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modules/nf-core/sratools/fasterqdump/tests/main.nf.test | 24.10.2 | docker
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workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | latest-everything | docker
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workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | latest-everything | docker
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modules/local/sra_fastq_ftp/tests/main.nf.test | latest-everything | docker
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modules/local/sra_fastq_ftp/tests/main.nf.test | latest-everything | docker
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modules/local/multiqc_mappings_config/tests/main.nf.test | 24.10.2 | docker
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modules/local/multiqc_mappings_config/tests/main.nf.test | 24.10.2 | docker
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subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test | 24.10.2 | docker
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subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test | 24.10.2 | docker
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workflows/sra/tests/sra_download_method_aspera.nf.test | latest-everything | docker
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workflows/sra/tests/sra_download_method_aspera.nf.test | latest-everything | docker
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subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test | latest-everything | docker
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subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test | latest-everything | docker
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tests/main.nf.test | 24.10.2 | docker
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tests/main.nf.test | 24.10.2 | docker
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workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | latest-everything | docker
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workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | latest-everything | docker
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modules/local/sra_fastq_ftp/tests/main.nf.test | 24.10.2 | docker
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modules/local/sra_fastq_ftp/tests/main.nf.test | 24.10.2 | docker
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workflows/sra/tests/sra_skip_fastq_download.nf.test | latest-everything | docker
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workflows/sra/tests/sra_skip_fastq_download.nf.test | latest-everything | docker
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workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | 24.10.2 | docker
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workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | 24.10.2 | docker
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modules/nf-core/sratools/prefetch/tests/main.nf.test | 24.10.2 | docker
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modules/nf-core/sratools/prefetch/tests/main.nf.test | 24.10.2 | docker
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modules/nf-core/untar/tests/main.nf.test | latest-everything | docker
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modules/nf-core/untar/tests/main.nf.test | latest-everything | docker
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modules/nf-core/sratools/fasterqdump/tests/main.nf.test | latest-everything | docker
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modules/nf-core/sratools/fasterqdump/tests/main.nf.test | latest-everything | docker
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modules/local/aspera_cli/tests/main.nf.test | latest-everything | docker
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modules/local/aspera_cli/tests/main.nf.test | latest-everything | docker
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modules/local/aspera_cli/tests/main.nf.test | 24.10.2 | docker
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modules/local/aspera_cli/tests/main.nf.test | 24.10.2 | docker
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subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test | latest-everything | docker
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subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test | latest-everything | docker
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subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test | 24.10.2 | docker
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subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test | 24.10.2 | docker
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modules/nf-core/sratools/prefetch/tests/main.nf.test | latest-everything | docker
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modules/nf-core/sratools/prefetch/tests/main.nf.test | latest-everything | docker
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modules/local/multiqc_mappings_config/tests/main.nf.test | latest-everything | docker
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modules/local/multiqc_mappings_config/tests/main.nf.test | latest-everything | docker
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modules/local/sra_ids_to_runinfo/tests/main.nf.test | latest-everything | docker
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modules/local/sra_ids_to_runinfo/tests/main.nf.test | latest-everything | docker
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workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | latest-everything | docker
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workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | latest-everything | docker
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modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test | latest-everything | docker
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modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test | latest-everything | docker
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tests/main.nf.test | latest-everything | docker
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tests/main.nf.test | latest-everything | docker
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confirm-pass
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Check for changes
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_completion.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
workflows/sra/tests/sra_download_method_aspera.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/local/sra_runinfo_to_ftp/tests/main.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_initialisation.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
workflows/sra/tests/sra_skip_fastq_download.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/local/sra_runinfo_to_ftp/tests/main.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
workflows/sra/tests/main.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
workflows/sra/tests/sra_download_method_sratools.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/untar/tests/main.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/local/sra_ids_to_runinfo/tests/main.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
workflows/sra/tests/main.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
workflows/sra/tests/sra_download_method_sratools.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_initialisation.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/sratools/fasterqdump/tests/main.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/local/sra_fastq_ftp/tests/main.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/local/multiqc_mappings_config/tests/main.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_completion.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/local/sra_to_samplesheet/tests/main.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
workflows/sra/tests/sra_download_method_aspera.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.function.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
tests/main.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/local/sra_fastq_ftp/tests/main.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
workflows/sra/tests/sra_skip_fastq_download.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/sratools/prefetch/tests/main.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/untar/tests/main.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.function.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/sratools/fasterqdump/tests/main.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/local/aspera_cli/tests/main.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/local/aspera_cli/tests/main.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/sratools/prefetch/tests/main.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/local/multiqc_mappings_config/tests/main.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/local/sra_to_samplesheet/tests/main.nf.test | 24.10.2 | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/local/sra_ids_to_runinfo/tests/main.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
tests/main.nf.test | latest-everything | docker
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
confirm-pass
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636