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  • The American University in Cairo
  • New Cairo

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  1. scRNA-seq scRNA-seq Public

    A repository where I practice scRNA-seq analysis from different papers

    Jupyter Notebook

  2. RNAseq_Pipeline_Snakemake RNAseq_Pipeline_Snakemake Public

    Snakemake pipeline with multiple features and tool options to analyze RNAseq data

    Python

  3. DNase-seq_RNNs_vs_CNNs DNase-seq_RNNs_vs_CNNs Public

    Shell

  4. Horizontal-Gene-Transfer-Activity-in-Red-Sea-Brine-Pools Horizontal-Gene-Transfer-Activity-in-Red-Sea-Brine-Pools Public

    16s Amplicon sequencing data analysis project

    HTML

  5. Rosalind-Bioinformatics Rosalind-Bioinformatics Public

    Solutions to bioinformatics problems published on ROSALIND Bioinformatics

    Jupyter Notebook

  6. Machine-Learning-Bioactivity-Prediction Machine-Learning-Bioactivity-Prediction Public

    Bioactivity Prediction Model for Phosphodiesterase 5A (PDE5A)

    Python