Release 3.8.0

Integrates latest backend versions. This includes VirulenceFinder 3.0.1 which can now take Nanopore reads.

Release 3.6.14

Backend upgrades: kma, ncbi-blast+, Flye, ResFinder

Release 3.6.12

Upgrades of backend services, notably KMA.

3.6.5

Release 3.6.5

• PointFinder summary output with gene/region

Full Changelog: 3.6.4...3.6.5

3.6.4

Release 3.6.4

• cgMLST first try species, then genus scheme
• Boost cgMLST max runtime
• Service cgMLST is optional for user target
• Make cgMLST skip cleanly (no fail) if no applicable scheme

Full Changelog: 3.6.2...3.6.3

3.5.3

Release 3.5.3

• Upgrade kma to 1.4.7
• Upgrade resfinder to 3.2.4
• Upgrade cgelib to 0.7.3
• Upgrade cgMLST to 1.1.5.11

Full Changelog: 3.5.2...3.5.3

3.5.1

Release 3.5.1

• Adds DisinFinder output
• Accept Nanopore reads for PointFinder (but prefer contigs)

Full Changelog: 3.5.0...3.5.1

3.5.0

Release 3.5.0 (with PointFinder working)

 - Note: ResFinder 4.2.1 upgrade requires database pull
 - DisinfFinder built in but doesn't report to bap-summary yet

3.4.1

3.4.13.4.13.4.1

3.3.1

Release 3.3.1

• Nanopore reads are assembled before running most CGE services (better results)
• Upgrade all back ends and Docker base to latest versions
• Project moved to github.com/kcri-tz