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28 Open 267 Closed
28 Open 267 Closed
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Issues list

NGSDAnnotateCNV: improve annotation of overlapping pathogenic CNVs
#591 opened Nov 8, 2024 by marc-sturm
@KilianIlius
Prepare a new demo with changes to the IGV initialization
#590 opened Nov 7, 2024 by ubuntolog
1 of 4 tasks
@ubuntolog
Add tool to fix manta SV VCF
#587 opened Oct 31, 2024 by leonschuetz
2 tasks
@leonschuetz
CnvReferenceCohort: Mean correlation
#584 opened Oct 16, 2024 by leonschuetz
1
SV: annotate classifcations of SVs and add filter to keep class 4/5 variants
#574 opened Aug 21, 2024 by marc-sturm
2 tasks
@KilianIlius
Replace vcfbreakmulti with ngs-bits VcfBreakMulti
#569 opened Aug 14, 2024 by leonschuetz
7 tasks done
@marc-sturm @KilianIlius
2
Error handling for Celery task chains
#537 opened Apr 25, 2024 by ubuntolog
@ubuntolog
update ClinVar API
#528 opened Mar 22, 2024 by marc-sturm
@leonschuetz
1
Upload API for read data
#520 opened Feb 28, 2024 by ubuntolog
Working demo of megSAP on AWS
#519 opened Feb 28, 2024 by ubuntolog
wrap all tools used in megSAP in singularity
#511 opened Feb 1, 2024 by ubuntolog
GSvar: refactoring of gene tab
#508 opened Jan 25, 2024 by marc-sturm
8 tasks
@marc-sturm
Keep URLs alive, if an instance of GSvar is running with a corresponding sample opened
#494 opened Oct 16, 2023 by ubuntolog
@ubuntolog
Amazon version of GSvarServer
#485 opened Sep 15, 2023 by ubuntolog
7 of 16 tasks
@ubuntolog
Poor performance in VersatileFile.readline enhancement
#480 opened Aug 29, 2023 by ubuntolog
@ubuntolog
convert legacy data to masked GRCh38
#479 opened Aug 29, 2023 by marc-sturm
4 of 10 tasks
@marc-sturm
1
Trimmed base percentage not correct for long read alignments
#468 opened Aug 4, 2023 by jakobmatthes
@leonschuetz
1
non personalized cfDNA Report
#461 opened Jul 21, 2023 by Ott-Alexander
3 tasks
RNA-Report:
#460 opened Jul 21, 2023 by Ott-Alexander
5 tasks
Better IGV integration with GSvar
#458 opened Jul 20, 2023 by ubuntolog
3 of 4 tasks
@ubuntolog
switch to new VICC classification version
#449 opened Jul 4, 2023 by Ott-Alexander
7 tasks
Loading tracks in IGV is very slow while working through Citrix-Server
#383 opened Jan 27, 2023 by ubuntolog
2 tasks
cfDNA: track variants which were excluded from cfDNA panel design in NGSD
#330 opened Oct 10, 2022 by leonschuetz
@leonschuetz
CUP- Correlation with reference tissues
#320 opened Sep 15, 2022 by Ott-Alexander
@Ott-Alexander
Import RNA_reference_tissue automatically
#303 opened Aug 11, 2022 by Ott-Alexander
4 of 5 tasks
1
@Ott-Alexander
ProTip! Find all open issues with in progress development work with linked:pr.