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HRA v2.2 #9

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HRA v2.2 #9

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79233a5
ref-models omaps drafts
emquardokus Oct 25, 2024
b96acdf
update 2 spleen 2dftu png file based on audit results
emquardokus Oct 30, 2024
a7b01f4
upload asct-b brain v1.7 with doi
emquardokus Dec 6, 2024
79c9ec9
blood vasculature v1.7
emquardokus Dec 9, 2024
c51b8ee
blood vasc organ crosswalk v1.3
emquardokus Dec 9, 2024
f2378af
fallopian tube v1.4
emquardokus Dec 9, 2024
b4053be
heart v1.5
emquardokus Dec 9, 2024
93f3a7b
kidney v1.6
emquardokus Dec 9, 2024
59cc100
update manubrium metadata
emquardokus Dec 9, 2024
69e452a
update manubrium metadata filename
emquardokus Dec 9, 2024
406051f
update filename
emquardokus Dec 9, 2024
2c9f4ae
update manubrium metadata
emquardokus Dec 9, 2024
8a6b2bd
update sternum metadata
emquardokus Dec 9, 2024
065c919
update metadata filename
emquardokus Dec 9, 2024
4aa918d
add folders united m/f
emquardokus Dec 9, 2024
907fdba
update united f metadata v1.7
emquardokus Dec 9, 2024
9c6c13d
update united m metadata
emquardokus Dec 9, 2024
79a02c8
update sternum metadata
emquardokus Dec 9, 2024
46e045c
update manubrium metadata
emquardokus Dec 9, 2024
acb12a0
update renal pelvis female left metadata
emquardokus Dec 9, 2024
60fa12c
update female renal pelvis right metadata
emquardokus Dec 9, 2024
68aebd2
update male renal pelvis left metadata
emquardokus Dec 9, 2024
efd7aca
update male renal pelvis right
emquardokus Dec 9, 2024
25c4d01
substitute male renal pelvis left glb for fbx file
emquardokus Dec 9, 2024
169edbd
Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg …
emquardokus Dec 9, 2024
d54ac5c
update omap-22 metadata
emquardokus Dec 9, 2024
8f37cfc
updated omap-23
emquardokus Dec 9, 2024
11732af
Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg …
emquardokus Dec 9, 2024
6f99fcf
update omap-23metadata
emquardokus Dec 9, 2024
548032d
Add dvc files for united male/female
bherr2 Dec 9, 2024
d8d728d
Merge branch 'main' of https://github.com/hubmapconsortium/hra-kg int…
bherr2 Dec 9, 2024
2c7d6e4
update omap-23 metadata
emquardokus Dec 9, 2024
c24f60f
upload revised omap-2, omap-9
emquardokus Dec 9, 2024
80694de
Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg …
emquardokus Dec 9, 2024
e1f5f05
update omap-2
emquardokus Dec 9, 2024
a5d269d
update omap-2 revised metadata
emquardokus Dec 9, 2024
2431c49
update omap-9 revised metadata
emquardokus Dec 9, 2024
c7401c8
Added base hra v2.2 collection (same as v2.1 at this stage for distin…
bherr2 Dec 9, 2024
b109e04
update lymph node metadata, add crosswalk revised folder/metadata
emquardokus Dec 9, 2024
ff1e18b
update lymphnode folders v1.4 m/f
emquardokus Dec 9, 2024
d0e1bdb
upload crosswalk v1.7 ref models
emquardokus Dec 9, 2024
e495ec4
revise lymph node metadata female
emquardokus Dec 9, 2024
1841700
revise male lymph node metadata v1.4
emquardokus Dec 9, 2024
f11410d
updates
emquardokus Dec 9, 2024
69754c8
Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg …
emquardokus Dec 9, 2024
8b66bc3
revise metadata brain v1.7
emquardokus Dec 9, 2024
2d2d351
revised blood vasculature metadata v1.7
emquardokus Dec 9, 2024
baa3ee6
updates
emquardokus Dec 9, 2024
da3eb0a
Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg …
emquardokus Dec 9, 2024
cd4e256
updates
emquardokus Dec 9, 2024
ca7be73
Fixed a few errors in the 3d ref crosswalk
bherr2 Dec 9, 2024
d870741
Move manubrium out of draft folder
bherr2 Dec 9, 2024
3da62e7
Fix sternum
bherr2 Dec 9, 2024
984c21e
Fix renal pelvis ref
bherr2 Dec 9, 2024
9a3d860
Add derived crosswalks
bherr2 Dec 9, 2024
ca8713e
Add / update hra and hra-api v2.2 collections
bherr2 Dec 9, 2024
a0ab318
Bump knee and ovary versions to account for fixed crosswalks
bherr2 Dec 9, 2024
5a79777
Use latest knee and ovary versions
bherr2 Dec 9, 2024
661d519
update knee f v1.3 metadata
emquardokus Dec 9, 2024
a579185
update f/r knee metadata
emquardokus Dec 9, 2024
4bc50b6
update ovary f/l metadata
emquardokus Dec 9, 2024
2106e03
update r/ovary
emquardokus Dec 9, 2024
d541505
omaps update, remove draft folders
emquardokus Dec 9, 2024
0188b94
revised metadata blood vas to organ crosswalk
emquardokus Dec 9, 2024
cfd8732
remove draft folder for blood vas to organ crosswalk
emquardokus Dec 9, 2024
22dbef4
revised fallopian tube metadata v1.4
emquardokus Dec 9, 2024
d57ae0c
fallopian tube metadata
emquardokus Dec 9, 2024
3822ae5
revise folder
emquardokus Dec 9, 2024
0bba063
revised metadata kidney
emquardokus Dec 9, 2024
cc7f498
remove draft folder
emquardokus Dec 9, 2024
5733ebc
remove draft folder
emquardokus Dec 9, 2024
3b8903d
Fix datatable for omap-23
bherr2 Dec 9, 2024
1feecf8
Fix metadata
bherr2 Dec 9, 2024
0f8b48e
Fix ref-organ/lymph-node-female metadata
bherr2 Dec 10, 2024
98391e9
Fix metadata
bherr2 Dec 10, 2024
ec8fbfc
update omap-21
emquardokus Dec 10, 2024
fa4d295
Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg …
emquardokus Dec 10, 2024
47445f8
update metadata omap-21
emquardokus Dec 10, 2024
e8090a0
update spinalcord table refs format
emquardokus Dec 10, 2024
a6d1752
update metadata spinal cord
emquardokus Dec 10, 2024
9786765
updated version on metadata omap-21
emquardokus Dec 10, 2024
be444e8
udpate anatomical systems table
emquardokus Dec 10, 2024
28e08df
remove draft directory, rename metadata file
emquardokus Dec 10, 2024
c0d9f56
update metadata anatomical system
emquardokus Dec 10, 2024
1e542cf
updated kidney metadata
emquardokus Dec 10, 2024
2974a32
removed draft folders spleen
emquardokus Dec 11, 2024
7700310
matched ai/png/svg files kidney-ascending-thin-loop-of-henle
emquardokus Dec 11, 2024
d05dcbf
update metadata for 2d-ftu-kidney-ascending-thin-loop-of-henle
emquardokus Dec 11, 2024
0c25ea9
revised eye v1.4
emquardokus Dec 11, 2024
c04d3de
update eye metadata
emquardokus Dec 11, 2024
b1ab153
remove draft folder; rename metadata fallopian tube
emquardokus Dec 11, 2024
4873791
revise heart metadata
emquardokus Dec 11, 2024
6065819
fix many asctb temp in eye
emquardokus Dec 11, 2024
6dbdcfe
Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg …
emquardokus Dec 11, 2024
5b45b48
update fallopian tube
emquardokus Dec 11, 2024
8a2e6f0
update kidney
emquardokus Dec 11, 2024
7b9a580
Update schemas and Uberon ontology
bherr2 Dec 11, 2024
f5febb7
Updates / fixes for various DOs
bherr2 Dec 11, 2024
d693a3d
pathway crosswalk revised
emquardokus Dec 11, 2024
57e1d17
revise metadata pathway crosswalk
emquardokus Dec 11, 2024
cd32698
Update collections
bherr2 Dec 11, 2024
a3071c2
revised peripheral-nervous-system-organ-crosswalk.csv
emquardokus Dec 11, 2024
abb7d41
Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg …
emquardokus Dec 11, 2024
0a27fff
update metadata PNS to organ crosswalk
emquardokus Dec 11, 2024
1e88f2a
2dftu revised 2d-ftu-kidney-cortical-collecting-duct
emquardokus Dec 11, 2024
a8cde9e
revised metadata 2d-ftu-kidney-cortical-collecting-duct
emquardokus Dec 11, 2024
8ef5442
revised 2d-ftu-kidney-inner-medullary-collecting-duct
emquardokus Dec 11, 2024
6cceb96
Update collection and add a crosswalk
bherr2 Dec 11, 2024
6419494
Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg …
bherr2 Dec 11, 2024
c6e96e1
update metadata 2d-ftu-kidney-inner-medullary-collecting-duct
emquardokus Dec 11, 2024
ce83220
Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg …
bherr2 Dec 11, 2024
df55ee9
revised 2d-ftu-kidney-outer-medullary-collecting-duct
emquardokus Dec 11, 2024
1de00c5
revise metadata for HBM724.KFSK.483
emquardokus Dec 11, 2024
50758c6
Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg …
bherr2 Dec 11, 2024
c361457
Fix / add crosswalks
bherr2 Dec 11, 2024
c89854d
revised kidney-thick-ascending-loop-of-henle
emquardokus Dec 11, 2024
1803ea0
revised metadata 2d-ftu-kidney-thick-ascending-loop-of-henle
emquardokus Dec 11, 2024
f093495
revised liver lobule
emquardokus Dec 11, 2024
dcd2676
revise liver lobule metadata
emquardokus Dec 11, 2024
b61c1c7
revised lung pulmonary alveolus
emquardokus Dec 11, 2024
bbca6c7
revised lung pulmonary alveolus metadata
emquardokus Dec 11, 2024
4c15c16
revised pancreatic intercalated duct
emquardokus Dec 11, 2024
24addd2
revised metadata pancreatic intercalated duct
emquardokus Dec 11, 2024
4e08a47
revised pancreatic acinus
emquardokus Dec 11, 2024
612bfb4
revise metadata pancreatic acinus
emquardokus Dec 11, 2024
cf0ef58
revised red pulp
emquardokus Dec 11, 2024
e759de8
revise red pulp metadata
emquardokus Dec 11, 2024
a1ebdb3
revise white pulp
emquardokus Dec 11, 2024
139b530
revise white pulp metadata
emquardokus Dec 11, 2024
c77aee1
Add crosswalks and updated hra collection
bherr2 Dec 11, 2024
b0a4026
Removing DVC (part 1)
bherr2 Dec 11, 2024
bac7e27
Removing DVC (part 2)
bherr2 Dec 11, 2024
d51bd29
Removing DVC (part 3)
bherr2 Dec 11, 2024
7589e88
Updates to test release scripts
bherr2 Dec 11, 2024
356a617
2d crosswalk metadata
emquardokus Dec 11, 2024
547a52f
Update renal pelvis crosswalks
bherr2 Dec 11, 2024
da16739
Added back the red pulp description field--it was missing from last r…
emquardokus Dec 11, 2024
975c911
revise red pulp metadata
emquardokus Dec 11, 2024
8e1a1b0
revise white pulp spleen metadata
emquardokus Dec 11, 2024
1edb182
Update collection
bherr2 Dec 11, 2024
b6440ce
Add renal pelvis for enrichments
bherr2 Dec 11, 2024
b6dab48
revised 2dftu crosswalk
emquardokus Dec 11, 2024
8a6f76b
revised 2dftu crosswalk metadata
emquardokus Dec 11, 2024
ded81e3
revised spleen table
emquardokus Dec 11, 2024
660bc24
update spleen metadata
emquardokus Dec 11, 2024
4c28108
revised thymus table
emquardokus Dec 11, 2024
fc69de0
revise thymus metadata
emquardokus Dec 11, 2024
57382e1
revise skin table
emquardokus Dec 11, 2024
10ab0f7
revised skin metadata
emquardokus Dec 11, 2024
5fb8ba6
Update crosswalks
bherr2 Dec 12, 2024
af86b06
Update patches
bherr2 Dec 12, 2024
a36dbe3
ctann crosswalks update
emquardokus Dec 12, 2024
90872be
azimuth metadata revised
emquardokus Dec 12, 2024
b3b976a
revised popv crosswalk
emquardokus Dec 12, 2024
603d88c
fixed mangled character in Katy Börner
emquardokus Dec 12, 2024
df9a344
Update collection
bherr2 Dec 12, 2024
e170b41
bump java max memory
bherr2 Dec 12, 2024
662ba79
Add code to build doi xml zip file
bherr2 Dec 13, 2024
33c2ecc
Added hubmap ids for 4 reference organs
bherr2 Dec 13, 2024

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