Code

HRA v2.2#9

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bherr2 wants to merge 159 commits intomainhubmapconsortium/hra-kg:mainfrom develophubmapconsortium/hra-kg:developCopy head branch name to clipboard

Commits

Commits on Oct 25, 2024

• ref-models omaps drafts

  emquardokus

  committed
  79233a5

Commits on Oct 30, 2024

• update 2 spleen 2dftu png file based on audit results

  emquardokus

  committed
  b96acdf

Commits on Dec 6, 2024

• upload asct-b brain v1.7 with doi

  emquardokus

  committed
  a7b01f4

Commits on Dec 9, 2024

• blood vasculature v1.7

  emquardokus

  committed
  79c9ec9

• blood vasc organ crosswalk v1.3

  emquardokus

  committed
  c51b8ee

• fallopian tube v1.4

  emquardokus

  committed
  f2378af

• heart v1.5

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  emquardokus

  committed
  b4053be

• kidney v1.6

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  emquardokus

  committed
  93f3a7b

• update manubrium metadata

  emquardokus

  authored
  59cc100

• update manubrium metadata filename

  emquardokus

  committed
  69e452a

• update filename

  emquardokus

  committed
  406051f

• update manubrium metadata

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  authored
  2c9f4ae

• update sternum metadata

  emquardokus

  authored
  8a6b2bd

• update metadata filename

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  committed
  065c919

• add folders united m/f

  emquardokus

  committed
  4aa918d

• update united f metadata v1.7

  emquardokus

  authored
  907fdba

• update united m metadata

  emquardokus

  authored
  9c6c13d

• update sternum metadata

  emquardokus

  authored
  79a02c8

• update manubrium metadata

  emquardokus

  authored
  46e045c

• update renal pelvis female left metadata

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  authored
  acb12a0

• update female renal pelvis right metadata

  emquardokus

  authored
  60fa12c

• update male renal pelvis left metadata

  emquardokus

  authored
  68aebd2

• update male renal pelvis right

  emquardokus

  authored
  efd7aca

• substitute male renal pelvis left glb for fbx file

  emquardokus

  committed
  25c4d01

• Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg into develop

  emquardokus

  committed
  169edbd

• update omap-22 metadata

  emquardokus

  authored
  d54ac5c

• updated omap-23

  emquardokus

  committed
  8f37cfc

• Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg into develop

  emquardokus

  committed
  11732af

• update omap-23metadata

  emquardokus

  committed
  6f99fcf

• Add dvc files for united male/female

  bherr2

  committed
  548032d

• Merge branch 'main' of https://github.com/hubmapconsortium/hra-kg into develop

  bherr2

  committed
  d8d728d

• update omap-23 metadata

  emquardokus

  authored
  2c7d6e4

• upload revised omap-2, omap-9

  emquardokus

  committed
  c24f60f

• Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg into develop

  emquardokus

  committed
  80694de

• update omap-2

  emquardokus

  committed
  e1f5f05

• update omap-2 revised metadata

  emquardokus

  authored
  a5d269d

• update omap-9 revised metadata

  emquardokus

  authored
  2431c49

• Added base hra v2.2 collection (same as v2.1 at this stage for distinguishing new/updated DOs)

  bherr2

  committed
  c7401c8

• update lymph node metadata, add crosswalk revised folder/metadata

  emquardokus

  committed
  b109e04

• update lymphnode folders v1.4 m/f

  emquardokus

  committed
  ff1e18b

• upload crosswalk v1.7 ref models

  emquardokus

  committed
  d0e1bdb

• revise lymph node metadata female

  emquardokus

  authored
  e495ec4

• revise male lymph node metadata v1.4

  emquardokus

  authored
  1841700

• updates

  emquardokus

  committed
  f11410d

• Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg into develop

  emquardokus

  committed
  69754c8

• revise metadata brain v1.7

  emquardokus

  authored
  8b66bc3

• revised blood vasculature metadata v1.7

  emquardokus

  authored
  2d2d351

• updates

  emquardokus

  committed
  baa3ee6

• Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg into develop

  emquardokus

  committed
  da3eb0a

• updates

  emquardokus

  committed
  cd4e256

• Fixed a few errors in the 3d ref crosswalk

  bherr2

  committed
  ca7be73

• Move manubrium out of draft folder

  bherr2

  committed
  d870741

• Fix sternum

  bherr2

  committed
  3da62e7

• Fix renal pelvis ref

  bherr2

  committed
  984c21e

• Add derived crosswalks

  bherr2

  committed
  9a3d860

• Add / update hra and hra-api v2.2 collections

  bherr2

  committed
  ca8713e

• Bump knee and ovary versions to account for fixed crosswalks

  bherr2

  committed
  a0ab318

• Use latest knee and ovary versions

  bherr2

  committed
  5a79777

• update knee f v1.3 metadata

  emquardokus

  authored
  661d519

• update f/r knee metadata

  emquardokus

  authored
  a579185

• update ovary f/l metadata

  emquardokus

  authored
  4bc50b6

• update r/ovary

  emquardokus

  authored
  2106e03

• omaps update, remove draft folders

  emquardokus

  committed
  d541505

• revised metadata blood vas to organ crosswalk

  emquardokus

  authored
  0188b94

• remove draft folder for blood vas to organ crosswalk

  emquardokus

  committed
  cfd8732

• revised fallopian tube metadata v1.4

  emquardokus

  authored
  22dbef4

• fallopian tube metadata

  emquardokus

  committed
  d57ae0c

• revise folder

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  committed
  3822ae5

• revised metadata kidney

  emquardokus

  authored
  0bba063

• remove draft folder

  emquardokus

  committed
  cc7f498

• remove draft folder

  emquardokus

  committed
  5733ebc

• Fix datatable for omap-23

  bherr2

  committed
  3b8903d

• Fix metadata

  bherr2

  committed
  1feecf8

Commits on Dec 10, 2024

• Fix ref-organ/lymph-node-female metadata

  bherr2

  committed
  0f8b48e

• Fix metadata

  bherr2

  committed
  98391e9

• update omap-21

  Show description for ec8fbfc
  emquardokus

  committed
  ec8fbfc

• Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg into develop

  emquardokus

  committed
  fa4d295

• update metadata omap-21

  emquardokus

  authored
  47445f8

• update spinalcord table refs format

  emquardokus

  committed
  e8090a0

• update metadata spinal cord

  emquardokus

  authored
  a6d1752

• updated version on metadata omap-21

  emquardokus

  authored
  9786765

• udpate anatomical systems table

  Show description for be444e8
  emquardokus

  committed
  be444e8

• remove draft directory, rename metadata file

  emquardokus

  committed
  28e08df

• update metadata anatomical system

  emquardokus

  authored
  c0d9f56

• updated kidney metadata

  emquardokus

  authored
  1e542cf

Commits on Dec 11, 2024

• removed draft folders spleen

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  committed
  2974a32

• matched ai/png/svg files kidney-ascending-thin-loop-of-henle

  emquardokus

  committed
  7700310

• update metadata for 2d-ftu-kidney-ascending-thin-loop-of-henle

  emquardokus

  authored
  d05dcbf

• revised eye v1.4

  emquardokus

  committed
  0c25ea9

• update eye metadata

  emquardokus

  authored
  c04d3de

• remove draft folder; rename metadata fallopian tube

  emquardokus

  authored
  b1ab153

• revise heart metadata

  emquardokus

  authored
  4873791

• fix many asctb temp in eye

  emquardokus

  committed
  6065819

• Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg into develop

  emquardokus

  committed
  6dbdcfe

• update fallopian tube

  emquardokus

  committed
  5b45b48

• update kidney

  emquardokus

  committed
  8a2e6f0

• Update schemas and Uberon ontology

  bherr2

  committed
  7b9a580

• Updates / fixes for various DOs

  bherr2

  committed
  f5febb7

• pathway crosswalk revised

  emquardokus

  committed
  d693a3d

• revise metadata pathway crosswalk

  emquardokus

  authored
  57e1d17

• Update collections

  bherr2

  committed
  cd32698

• revised peripheral-nervous-system-organ-crosswalk.csv

  emquardokus

  committed
  a3071c2

• Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg into develop

  emquardokus

  committed
  abb7d41

• update metadata PNS to organ crosswalk

  emquardokus

  authored
  0a27fff

• 2dftu revised 2d-ftu-kidney-cortical-collecting-duct

  emquardokus

  committed
  1e88f2a

• revised metadata 2d-ftu-kidney-cortical-collecting-duct

  emquardokus

  authored
  a8cde9e

• revised 2d-ftu-kidney-inner-medullary-collecting-duct

  emquardokus

  committed
  8ef5442

• Update collection and add a crosswalk

  bherr2

  committed
  6cceb96

• Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg into develop

  bherr2

  committed
  6419494

• update metadata 2d-ftu-kidney-inner-medullary-collecting-duct

  emquardokus

  authored
  c6e96e1

• Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg into develop

  bherr2

  committed
  ce83220

• revised 2d-ftu-kidney-outer-medullary-collecting-duct

  emquardokus

  committed
  df55ee9

• revise metadata for HBM724.KFSK.483

  emquardokus

  authored
  1de00c5

• Merge branch 'develop' of https://github.com/hubmapconsortium/hra-kg into develop

  bherr2

  committed
  50758c6

• Fix / add crosswalks

  bherr2

  committed
  c361457

• revised kidney-thick-ascending-loop-of-henle

  emquardokus

  committed
  c89854d

• revised metadata 2d-ftu-kidney-thick-ascending-loop-of-henle

  emquardokus

  authored
  1803ea0

• revised liver lobule

  emquardokus

  committed
  f093495

• revise liver lobule metadata

  emquardokus

  authored
  dcd2676

• revised lung pulmonary alveolus

  emquardokus

  committed
  b61c1c7

• revised lung pulmonary alveolus metadata

  emquardokus

  authored
  bbca6c7

• revised pancreatic intercalated duct

  emquardokus

  committed
  4c15c16

• revised metadata pancreatic intercalated duct

  emquardokus

  authored
  24addd2

• revised pancreatic acinus

  emquardokus

  committed
  4e08a47

• revise metadata pancreatic acinus

  emquardokus

  authored
  612bfb4

• revised red pulp

  emquardokus

  committed
  cf0ef58

• revise red pulp metadata

  emquardokus

  authored
  e759de8

• revise white pulp

  emquardokus

  committed
  a1ebdb3

• revise white pulp metadata

  emquardokus

  authored
  139b530

• Add crosswalks and updated hra collection

  bherr2

  committed
  c77aee1

• Removing DVC (part 1)

  bherr2

  committed
  b0a4026

• Removing DVC (part 2)

  bherr2

  committed
  bac7e27

• Removing DVC (part 3)

  bherr2

  committed
  d51bd29

• Updates to test release scripts

  bherr2

  committed
  7589e88

• 2d crosswalk metadata

  emquardokus

  committed
  356a617

• Update renal pelvis crosswalks

  bherr2

  committed
  547a52f

• Added back the red pulp description field--it was missing from last release too.

  emquardokus

  authored
  da16739

• revise red pulp metadata

  emquardokus

  authored
  975c911

• revise white pulp spleen metadata

  emquardokus

  authored
  8e1a1b0

• Update collection

  bherr2

  committed
  1edb182

• Add renal pelvis for enrichments

  bherr2

  committed
  b6440ce

• revised 2dftu crosswalk

  emquardokus

  committed
  b6dab48

• revised 2dftu crosswalk metadata

  emquardokus

  authored
  8a6f76b

• revised spleen table

  emquardokus

  committed
  ded81e3

• update spleen metadata

  emquardokus

  authored
  660bc24

• revised thymus table

  emquardokus

  committed
  4c28108

• revise thymus metadata

  emquardokus

  authored
  fc69de0

• revise skin table

  emquardokus

  committed
  57382e1

• revised skin metadata

  emquardokus

  authored
  10ab0f7

Commits on Dec 12, 2024

• Update crosswalks

  bherr2

  committed
  5fb8ba6

• Update patches

  bherr2

  committed
  af86b06

• ctann crosswalks update

  Show description for a36dbe3
  emquardokus

  committed
  a36dbe3

• azimuth metadata revised

  emquardokus

  authored
  90872be

• revised popv crosswalk

  emquardokus

  authored
  b3b976a

• fixed mangled character in Katy Börner

  emquardokus

  committed
  603d88c

• Update collection

  bherr2

  committed
  df9a344

• bump java max memory

  bherr2

  committed
  e170b41

Commits on Dec 13, 2024

• Add code to build doi xml zip file

  bherr2

  committed
  662ba79

• Added hubmap ids for 4 reference organs

  bherr2

  committed
  33c2ecc