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EQSIM benchmark code and fixes #213

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EQSIM benchmark code and fixes #213

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@houjun houjun commented Oct 23, 2024 •
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Description

  • Add EQSIM-related benchmark code
  • Add (partial) support for ZFP compression
  • Fix an issue with data querying
  • Fix an issue with >1GB reads
  • Fix an issue with 2d/3d reads
  • Fix an issue with Perlmutter CI module load

What changes are proposed in this pull request?

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality not to work as expected; for instance, examples in this repository must be updated too)
  • This change requires a documentation update

Checklist:

  • My code modifies existing public API, or introduces new public API, and I updated or wrote docstrings
  • I have commented my code
  • My code requires documentation updates, and I have made corresponding changes to the documentation
  • I have added tests that prove my fix is effective or that my feature works
  • New and existing unit tests pass locally with my changes

houjun and others added 25 commits February 23, 2024 14:51
@houjun
Update getting_started.rst (#184)
f8d5f8d
@hyunjuooh @jeanbez
Removing gres option for ctest (#182)
38d5f77 
* Removing gres option for ctest
* Removing gres option from scripts
* Update check for core

---------

Co-authored-by: Hyunju Oh <[email protected]>
Co-authored-by: Jean Luca Bez <[email protected]>
@jeanbez
enable cache by default (#187)
0f326da
@houjun
Benchmark code for EQSIM data
cc8c2a0
@github-actions
Committing clang-format changes
ab4d5b6
@houjun
Minor adjustments
512e714
@github-actions
Committing clang-format changes
8a5835f
@houjun
Updates
1f661bc
@github-actions
Committing clang-format changes
a7903e1
@houjun
Change vpicio to use local server partitioning, add some debug prints
b0f1c8f
@github-actions
Committing clang-format changes
788dd2e
@houjun
Add metadata query to benchmark code
dcc56a1
@github-actions
Committing clang-format changes
cf3f7a5
@houjun
Add ZFP compression for read and write
8d44125
@github-actions
Committing clang-format changes
b8840e0
@houjun
Add a option to use more ranks to read data so total data of each ran…
3bcdf53 
…k is less than the 4GB chunk limit
@github-actions
Committing clang-format changes
3e97d5d
@houjun
Add a data query code for EQSIM data
0fe3f6f
@github-actions
Committing clang-format changes
a502ac9
@houjun
Minor adjustments for the HDF5 read code
b72e981
@github-actions
Committing clang-format changes
9a3ba68
@houjun
Fix an issue with periodic data flush, minor changes to benchmark code
7a069b3
@github-actions
Committing clang-format changes
b3f618f
@houjun
fix an issue with 3d read segfault
4c9d2bb
@github-actions
Committing clang-format changes
9068c09
@houjun
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houjun commented Nov 4, 2024

@jeanbez @zhangwei217245

@jeanbez jeanbez changed the title Eqsim EQSIM benchmark code and fixes Nov 4, 2024
@jeanbez jeanbez added type: bug Something isn't working type: enhancement New feature or request type: tests Improvements or additions to tests labels Nov 4, 2024
@jeanbez jeanbez added this to the v.0.6 milestone Nov 4, 2024
@jeanbez jeanbez mentioned this pull request Nov 4, 2024
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@jeanbez jeanbez mentioned this pull request Nov 26, 2024
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@jeanbez jeanbez jeanbez approved these changes

@zhangwei217245 zhangwei217245 zhangwei217245 approved these changes

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type: bug Something isn't working type: enhancement New feature or request type: tests Improvements or additions to tests
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@houjun @zhangwei217245 @jeanbez @hyunjuooh