update vignette and cran-comment

fmichonneau · Feb 2, 2024 · 13885f9 · 13885f9
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diff --git a/cran-comments.md b/cran-comments.md
@@ -1,8 +1,6 @@
 ## R CMD check results
 
-0 errors | 0 warnings | 0 note
-
-* This release addresses the content of the email sent by Kurt Hornik on 2022-10-13.
+0 error | 0 warning | 0 note
 
 ## Reverse Dependencies
 

diff --git a/vignettes/foghorn.Rmd b/vignettes/foghorn.Rmd
@@ -1,7 +1,7 @@
 ---
 title: "Get started"
 author: "Francois Michonneau"
-date: "2022-10-24"
+date: "2024-02-02"
 output: rmarkdown::html_vignette
 vignette: >
   %\VignetteIndexEntry{Get started}
@@ -33,18 +33,15 @@ summary_cran_results(email = "[email protected]")
 ```
 
 ```
-## ✔ All clear for riceware, rotl!
-```
-
-```
-## ✖  Package with errors on CRAN: 
-##   - foghorn (4)
+## ✔ All clear for riceware!
 ```
 
 ```
 ## ★  Packages with notes on CRAN: 
-##   - phylobase (5)
-##   - rncl (4)
+##   - foghorn (2)
+##   - phylobase (2)
+##   - rncl (5)
+##   - rotl (2)
 ```
 
 `summary_cran_results()` is actually an alias of
@@ -62,11 +59,11 @@ cran_results(email = "[email protected]")
 ## # A tibble: 5 × 7
 ##   package   error  fail  warn  note    ok has_other_issues
 ##   <chr>     <int> <int> <int> <int> <int> <lgl>           
-## 1 foghorn       4     0     0     0     9 FALSE           
-## 2 phylobase     0     0     0     5     8 FALSE           
-## 3 riceware      0     0     0     0    13 FALSE           
-## 4 rncl          0     0     0     4     9 FALSE           
-## 5 rotl          0     0     0     0    13 FALSE
+## 1 foghorn       0     0     0     2    10 FALSE           
+## 2 phylobase     0     0     0     2    10 FALSE           
+## 3 riceware      0     0     0     0    12 FALSE           
+## 4 rncl          0     0     0     5     7 FALSE           
+## 5 rotl          0     0     0     2    10 FALSE
 ```
 
 In addition of your own packages, you can also check the results for
@@ -78,15 +75,10 @@ any other packages that might be of interest to you:
 summary_cran_results(pkg = c("ggplot2", "dplyr"))
 ```
 
-```
-## ✖  Package with errors on CRAN: 
-##   - dplyr (1)
-```
-
 ```
 ## ★  Packages with notes on CRAN: 
-##   - dplyr (6)
-##   - ggplot2 (9)
+##   - dplyr (2)
+##   - ggplot2 (7)
 ```
 
 ```r
@@ -97,8 +89,8 @@ cran_results(pkg = c("ggplot2", "dplyr"))
 ## # A tibble: 2 × 7
 ##   package error  fail  warn  note    ok has_other_issues
 ##   <chr>   <int> <int> <int> <int> <int> <lgl>           
-## 1 dplyr       1     0     0     6     6 FALSE           
-## 2 ggplot2     0     0     0     9     4 FALSE
+## 1 dplyr       0     0     0     2    10 FALSE           
+## 2 ggplot2     0     0     0     7     5 FALSE
 ```
 
 ```r
@@ -108,18 +100,16 @@ summary_cran_results(email = "[email protected]",
 ```
 
 ```
-## ✔ All clear for mregions, riceware, ridigbio, rotl!
-```
-
-```
-## ✖  Package with errors on CRAN: 
-##   - foghorn (4)
+## ✔ All clear for riceware, ridigbio!
 ```
 
 ```
 ## ★  Packages with notes on CRAN: 
-##   - phylobase (5)
-##   - rncl (4)
+##   - foghorn (2)
+##   - mregions (6)
+##   - phylobase (2)
+##   - rncl (5)
+##   - rotl (2)
 ```
 
 ```r
@@ -131,13 +121,13 @@ cran_results(email = "[email protected]",
 ## # A tibble: 7 × 7
 ##   package   error  fail  warn  note    ok has_other_issues
 ##   <chr>     <int> <int> <int> <int> <int> <lgl>           
-## 1 foghorn       4     0     0     0     9 FALSE           
-## 2 mregions      0     0     0     0    13 FALSE           
-## 3 phylobase     0     0     0     5     8 FALSE           
-## 4 riceware      0     0     0     0    13 FALSE           
-## 5 ridigbio      0     0     0     0    13 FALSE           
-## 6 rncl          0     0     0     4     9 FALSE           
-## 7 rotl          0     0     0     0    13 FALSE
+## 1 foghorn       0     0     0     2    10 FALSE           
+## 2 mregions      0     0     0     6     6 FALSE           
+## 3 phylobase     0     0     0     2    10 FALSE           
+## 4 riceware      0     0     0     0    12 FALSE           
+## 5 ridigbio      0     0     0     0    12 FALSE           
+## 6 rncl          0     0     0     5     7 FALSE           
+## 7 rotl          0     0     0     2    10 FALSE
 ```
 
 You can inspect the logs for the check results using
@@ -153,10 +143,9 @@ tidyr_details
 
 ```
 ## # A tibble: 1 × 7
-##   package version result check                         flavors   n_fla…¹ message
-##   <chr>   <chr>   <chr>  <chr>                         <chr>       <dbl> <chr>  
-## 1 tidyr   1.2.1   NOTE   data for non-ASCII characters r-devel-…       6 "     …
-## # … with abbreviated variable name ¹n_flavors
+##   package version result check                         flavors            n_flavors message
+##   <chr>   <chr>   <chr>  <chr>                         <chr>                  <dbl> <chr>  
+## 1 tidyr   1.3.1   NOTE   data for non-ASCII characters r-devel-linux-x86…         2 "     …
 ```
 
 ```r
@@ -167,10 +156,6 @@ summary(tidyr_details)
 ## ★ tidyr - note: data for non-ASCII characters
 ##    ❯ r-devel-linux-x86_64-fedora-clang 
 ##    ❯ r-devel-linux-x86_64-fedora-gcc 
-##    ❯ r-release-macos-arm64 
-##    ❯ r-release-macos-x86_64 
-##    ❯ r-oldrel-macos-arm64 
-##    ❯ r-oldrel-macos-x86_64 
 ## 
 ##      Note: found 24 marked UTF-8 strings
 ```