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Issues list

[Replace Ketcher mol loader with Indigo] Unable to save query features in atoms to mol v2000, system throws exception Bug Export to MOL Bucket: Export to MOL related issues Priority: Medium Query features Bucket: Query features related issues regress found by autotest Severity: Medium Medium level visibility to the user Test Automation affected That issue affect on existed auto test, please update screenshots after fix
#2709 opened Dec 20, 2024 by AlexeyGirin Indigo-1.28.0-rc.2
[Replace Ketcher mol loader with Indigo] Export to SMILES works wrong if loaded from MOL Export to Extended SMILES Bucket: Bugs related to Export to Extended SMILES Export to MOL Bucket: Export to MOL related issues Priority: Medium regress found by autotest Severity: Medium Medium level visibility to the user Test Automation affected That issue affect on existed auto test, please update screenshots after fix
#2708 opened Dec 20, 2024 by AlexeyGirin Indigo-1.28.0-rc.2
[Replace Ketcher mol loader with Indigo] Atom Query feature export: System lost MOST "Substitution count" values Bug Export to MOL Bucket: Export to MOL related issues Micromolecules canvas Bucket: Micromolecules canvas related issues Priority: Low Query features Bucket: Query features related issues Severity: Low Low level visibility to the user
#2707 opened Dec 20, 2024 by AlexeyGirin Indigo-1.28.0-rc.2
[Replace Ketcher mol loader with Indigo] System can't load from MOL v2000, throws an error: Convert error! struct data not recognized as molecule, query, reaction or reaction query Bug Export to MOL Bucket: Export to MOL related issues Priority: Medium regress found by autotest Severity: Medium Medium level visibility to the user Test Automation affected That issue affect on existed auto test, please update screenshots after fix
#2706 opened Dec 20, 2024 by AlexeyGirin Indigo-1.28.0-rc.2
[Replace Ketcher mol loader with Indigo] System implicitly export canvas to mol v3000 if loaded from mol v2000 Bug Export to MOL Bucket: Export to MOL related issues Priority: Low regress found by autotest Severity: Low Low level visibility to the user Test Automation affected That issue affect on existed auto test, please update screenshots after fix
#2705 opened Dec 20, 2024 by AlexeyGirin Indigo-1.28.0-rc.2
[Replace Ketcher mol loader with Indigo] System losts one stereo label if load from MOL Bug Export to MOL Bucket: Export to MOL related issues Micromolecules canvas Bucket: Micromolecules canvas related issues Priority: Medium regress found by autotest Severity: Medium Medium level visibility to the user Test Automation affected That issue affect on existed auto test, please update screenshots after fix
#2704 opened Dec 20, 2024 by AlexeyGirin Indigo-1.28.0-rc.2
[Replace Ketcher mol loader with Indigo] Unable to save canvas to MOL - system throws an error: Given string could not be loaded as (query or plain) molecule or reaction, see the error messages: 'stereocenters: restorePyramid(): stereocenter has more than 4 neighbors', 'RXN loader: bad header {', 'RXN loader: bad header {', 'stereocenters: restorePyramid(): stereocenter has more than 4 neighbors' Bug Export to MOL Bucket: Export to MOL related issues Micromolecules canvas Bucket: Micromolecules canvas related issues Priority: Low regress found by autotest Severity: Low Low level visibility to the user Test Automation affected That issue affect on existed auto test, please update screenshots after fix
#2702 opened Dec 20, 2024 by AlexeyGirin Indigo-1.28.0-rc.2
[Replace Ketcher mol loader with Indigo] Data label coordinates got lost if loaded from MOL Bug Export to MOL Bucket: Export to MOL related issues Micromolecules canvas Bucket: Micromolecules canvas related issues Priority: Low regress found by autotest Test Automation affected That issue affect on existed auto test, please update screenshots after fix
#2701 opened Dec 20, 2024 by AlexeyGirin Indigo-1.28.0-rc.2
[Replace Ketcher mol loader with Indigo] R Group login condition is wrong if loaded from MOL Bug Export to MOL Bucket: Export to MOL related issues Micromolecules canvas Bucket: Micromolecules canvas related issues Priority: Low regress found by autotest Severity: Low Low level visibility to the user Test Automation affected That issue affect on existed auto test, please update screenshots after fix
#2699 opened Dec 20, 2024 by AlexeyGirin Indigo-1.28.0-rc.2
Ketcher sends different set of parameters to indigo in case of Copy/Paste and Layout operation Bug Micromolecules canvas Bucket: Micromolecules canvas related issues Priority: High Severity: Medium Medium level visibility to the user
#2692 opened Dec 2, 2024 by AlexeyGirin Indigo-1.28.0-rc.1 (Stabilization)
@even1024
2
Truncating sign "..." isn't presented when reaction's conditions are truncated because of the long name Bug Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: Low
#2661 opened Nov 27, 2024 by ivanmaslow Refined Backlog
@even1024
Reaction's name and conditions aren't recognized on save to RDF for single/cascade reaction with simple arrows Bug Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: High
#2644 opened Nov 20, 2024 by ivanmaslow Backlog
@even1024
1
Saving to MOL 3000 cause template data loss that causes wrong export to HELM Bug Hydrogen bonds Bucket: Bugs related to Hydrogen bonds Priority: Medium
#2622 opened Nov 8, 2024 by AlexeyGirin Indigo-1.28.0-rc.1 (Stabilization)
@AliaksandrDziarkach
This molfile is not rendered
#2614 opened Nov 5, 2024 by Tigerfink
Text above single arrow reaction is not centered Bug MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: Medium
#2609 opened Nov 5, 2024 by Zhirnoff Backlog
@even1024
1
Uppercase text extends beyond the arrow and overlaps with canvas structures Bug MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: Medium
#2607 opened Nov 5, 2024 by Zhirnoff Refined Backlog
Reagents are repositioned above the reaction arrow after saving and loading RXN V2000/V3000 files Export to RXN Bucket: Export to RXN related issues Priority: High regression
#2591 opened Oct 31, 2024 by Zhirnoff Indigo-1.28.0-rc.1 (Stabilization)
Jump on uninitialised value
#2589 opened Oct 30, 2024 by hwelzel
Arrows overlap atoms of chemical elements after save/load to/from RDF or layout actions Bug Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: Medium
#2586 opened Oct 25, 2024 by ivanmaslow Refined Backlog
@even1024
The ordering of reactions is changed after Undo/Redo of adding from file and Layout or Save/Load actions to/from RDF Bug Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: High
#2585 opened Oct 25, 2024 by ivanmaslow Refined Backlog
@even1024
The ordering of several separate reactions is changed after layout and save/load to/from RDF actions Bug Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: High
#2584 opened Oct 25, 2024 by ivanmaslow Refined Backlog
@even1024
Atoms losts their valence value on export to CDXML Bug Export to CDXML Bucket: Bugs related to Export to CDXML Priority: High regression
#2582 opened Oct 25, 2024 by AlexeyGirin Indigo-1.27.0-rc.3
1
Error on connection to opensearch instance with indigo Bingo-Elastic
#2562 opened Oct 17, 2024 by MysterionRise
@MysterionRise
Reaction Auto-Mapping Tool doesn't work for single and cascade reactions with Multi-Tailed Arrow Bug Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: High
#2556 opened Oct 15, 2024 by ivanmaslow Refined Backlog
@even1024
"Calculate Properties" for macromolecules
#2552 opened Oct 14, 2024 by ljubica-milovic
ProTip! Adding no:label will show everything without a label.