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Issues: common-workflow-library/bio-cwl-tools

Contributing
#10 opened Aug 7, 2019 by mr-c
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23 Open 6 Closed
23 Open 6 Closed
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Issues list

copy over Phenomenal tools
#157 opened Oct 24, 2024 by mr-c
Output in Kallisto-quant not working
#156 opened Jun 19, 2024 by Brilator
3
old containers neeed updating
#154 opened Apr 17, 2024 by mr-c
16 tasks
1
register these tool descriptions at bio.tool
#150 opened Jun 17, 2023 by mr-c
1
Add "intent" fields with EDAM Operation values where possible
#149 opened Jun 16, 2023 by mr-c
Add script to generate .dockstore.yml
#140 opened Aug 17, 2022 by svonworl
copy resource reqs from Galaxy's TPV
#138 opened Jul 19, 2022 by mr-c
subread/featureCounts: mapped_reads should have a secondaryFiles entry for the required index
#134 opened Mar 24, 2022 by kafeenstra
Consider supporting Top 100 packages in Bio-conda
#118 opened Feb 8, 2021 by swzCuroverse
A call for a bio-cwl-tools team
#105 opened Oct 13, 2020 by pvanheus
9
Pull request template
#103 opened Oct 7, 2020 by pvanheus
1
Allow public domain donations from US Federal Government employees
#96 opened Jul 19, 2020 by mr-c
VARSCAN and SAMTools_mpileup CWL tool.
#79 opened May 13, 2020 by ambarishK
1
fastq_dump.cwl might have some problems when running without Internet connection invalid This doesn't seem right
#36 opened Oct 24, 2019 by michael-kotliar
@michael-kotliar
6
Migrate all the tools from https://github.com/common-workflow-language/workflows
#14 opened Aug 7, 2019 by mr-c
Contributing
#10 opened Aug 7, 2019 by mr-c
28
The structure of the repository
#8 opened Aug 6, 2019 by michael-kotliar
7
Must there be a public software container?
#7 opened Aug 6, 2019 by mr-c
6
README includes a section on using cwldep to grab tools from this repo
#6 opened Aug 6, 2019 by tetron
Document metadata for tools
#5 opened Aug 6, 2019 by tetron
4
Must described tools be under an F/OSS license and have a container already?
#4 opened Aug 6, 2019 by mr-c
1
write a README
#3 opened Aug 6, 2019 by mr-c
1
collecting existing Apache 2.0 licensed CWL tool descriptions
#1 opened Aug 6, 2019 by mr-c
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