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old containers neeed updating #154

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mr-c opened this issue Apr 17, 2024 · 1 comment
Open
16 tasks

old containers neeed updating #154

mr-c opened this issue Apr 17, 2024 · 1 comment

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@mr-c
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mr-c commented Apr 17, 2024 •
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[DEPRECATION NOTICE] Docker Image Format v1 and Docker Image manifest version 2, schema 1 support is disabled by default and will be removed in an upcoming release. Suggest the author of quay.io/biocontainers/subread:1.5.0p3--0 to upgrade the image to the OCI Format or Docker Image manifest v2, schema 2. More information at https://docs.docker.com/go/deprecated-image-specs/

  • quay.io/biocontainers/bowtie2:2.3.0--py36_1
  • quay.io/biocontainers/bwa:0.7.17--ha92aebf_3
  • quay.io/biocontainers/crossmap:0.2.7--py27_0
  • quay.io/biocontainers/fastp:0.20.0--hdbcaa40_0
  • quay.io/biocontainers/gatk4:4.1.1.0--0
  • quay.io/biocontainers/gatk4:4.1.3.0--0
  • quay.io/biocontainers/kallisto:0.45.0--hdcc98e5_0
  • quay.io/biocontainers/kraken2:2.0.8_beta--pl526h6bb024c_0
  • quay.io/biocontainers/mashmap:2.0--gsl2.2_1
  • quay.io/biocontainers/minimap2:2.17--h8b12597_1
  • quay.io/biocontainers/multiqc:1.7--py_4
  • quay.io/biocontainers/phantompeakqualtools:1.2--1
  • quay.io/biocontainers/pizzly:0.37.3--0
  • quay.io/biocontainers/seqkit:0.7.1--0
  • quay.io/biocontainers/snp-sites:2.5.1--hed695b0_0
  • quay.io/biocontainers/spades:3.13.0--0
@mr-c mr-c mentioned this issue Apr 17, 2024
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mr-c commented Apr 20, 2024

My dumb testing method: for container in $(git grep dockerPull | awk '{print $3}' | sort -u ); do echo ${container}; docker pull ${container}; done

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