fix path

cdanielmachado · Oct 13, 2020 · 68389a6 · 68389a6
1 parent 22a621c
commit 68389a6
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Showing 2 changed files with 1 addition and 2 deletions.
diff --git a/carveme/cli/carve.py b/carveme/cli/carve.py
@@ -23,7 +23,7 @@ def first_run_check():
     if not os.path.exists(diamond_db):
         print("Running diamond for the first time, please wait while we build the internal database...")
         fasta_file = project_dir + config.get('input', 'fasta_file')
-        cmd = ['diamond', 'makedb', '--in', fasta_file, '-d', diamond_db.split('.')[0]]
+        cmd = ['diamond', 'makedb', '--in', fasta_file, '-d', diamond_db[:-5]]
         try:
             exit_code = subprocess.call(cmd)
         except OSError:

diff --git a/setup.py b/setup.py
@@ -24,7 +24,6 @@
         'data/input/metabolomics_park2016.csv',
         'data/input/unbalanced_metabolites.csv',
         'data/input/bigg_proteins.faa',
-        'data/input/bigg_proteins.dmnd',
         'data/input/equilibrator_compounds.tsv.gz',
         'data/input/refseq_release_201.tsv.gz',
         'data/generated/bigg_gibbs.csv',