Skip to content

Issues: cdanielmachado/carveme

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

45 Open 146 Closed
45 Open 146 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Missing SBO Terms in XML Output with CarveMe
#212 opened Oct 18, 2024 by xuetingyue
Multi-process processing error
#211 opened Oct 12, 2024 by green34567
1
Too many charge unbalaced reactions
#210 opened Sep 30, 2024 by AnnyMais03
installation issue
#209 opened Sep 21, 2024 by ChenCongZ
Inconsistencies between reactions in universe file and in model generated from it
#208 opened Sep 13, 2024 by Brunokemon
2
Carveme not finishing with SCIP solver
#205 opened Jun 21, 2024 by ryan-boobybiome
Carveme 2.0
#204 opened Jun 19, 2024 by rhernandvel
Incomplete cyanobacteria universe - lacks photosynthesis related reactions
#203 opened Jun 14, 2024 by GediminasA
1
Location of gapfill outputs
#201 opened May 21, 2024 by AzizBenA
Hidden universe?
#197 opened Mar 15, 2024 by NatashaJorge
Having issues with cyanobacteria universe in latest version, and cplex installation for carveme version 1.4
#195 opened Jan 17, 2024 by marlaux
Is it necessary to use a VNC server for the modeling process using CarveMe?
#194 opened Jan 6, 2024 by Thomas-tang880
I meet some errors when I use CarveMe for gap-filling
#193 opened Dec 30, 2023 by microbial-cookie
4
How to create a universe?
#192 opened Dec 30, 2023 by kako-f
Error when giving user universe
#190 opened Nov 27, 2023 by NatashaJorge
Biomass reaction in bacteria_universe sums to 1.03
#189 opened Oct 26, 2023 by sulheim
1
incompatibility with BIGG formula
#188 opened Aug 21, 2023 by Shlomit840
'BiGG_gene' is both an index level and a column label, which is ambiguous.
#187 opened Aug 11, 2023 by Baizhou12138
1
Diamond version incompatible / TypeError: sequence item 0
#186 opened Jul 25, 2023 by chumphati
CarveMe doesn’t satisfy the original protein complex definitions during the building of GPRs
#182 opened Jun 15, 2023 by lazzarigioele
Solver error: pip release not corresponding to latest release
#181 opened Jun 12, 2023 by Robaina
CarveMe ignores highly similar genes during the building of GPRs
#180 opened Jun 7, 2023 by lazzarigioele
Error encountered reading the model file
#179 opened May 17, 2023 by jiuchuyuan
2
The interested compound without BIGG id, could you help me add to the media components that Carveme can identify?
#178 opened May 11, 2023 by microbial-cookie
example codes
#177 opened May 5, 2023 by parsanayyara
ProTip! Add no:assignee to see everything that’s not assigned.