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carpenterlab

Carpenter Lab

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  1. unet4nuclei unet4nuclei Public

    Forked from jr0th/segmentation

    U-net based segmentation of nuclei in microscopy images

    Jupyter Notebook 51 11

  2. 2019_caicedo_dsb 2019_caicedo_dsb Public

    Analysis of results of the Data Science Bowl 2018

    Jupyter Notebook 20 5

  3. 2016_Bray_NatureProtocols 2016_Bray_NatureProtocols Public

    Supporting data files, documentation, and updated tips for the Cell Painting protocol

    19 5

  4. 2019_Caicedo_CytometryA 2019_Caicedo_CytometryA Public

    Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images

    Jupyter Notebook 13 8

  5. 2016_Pawlowski_MLCB 2016_Pawlowski_MLCB Public

    Supporting materials for automated morphological profiling using pre-trained deep convolutional networks

    Jupyter Notebook 8 2

  6. 2018_McQuin_PLOSBio 2018_McQuin_PLOSBio Public

    6 3

Repositories

Showing 10 of 16 repositories
  • 2019_Doan_CytometryA Public

    Label-free monitoring of acute lymphoblastic leukemia by computer vision

    carpenterlab/2019_Doan_CytometryA’s past year of commit activity
    Python 2 BSD-3-Clause 0 0 0 Updated Mar 30, 2023
  • 2018_Rohban_NatComm Public

    Capturing single-cell heterogeneity via data fusion improves image-based profiling

    carpenterlab/2018_Rohban_NatComm’s past year of commit activity
    R 4 BSD-3-Clause 3 2 0 Updated Jul 6, 2022
  • 2016_Bray_NatureProtocols Public

    Supporting data files, documentation, and updated tips for the Cell Painting protocol

    carpenterlab/2016_Bray_NatureProtocols’s past year of commit activity
    19 5 1 0 Updated Dec 3, 2021
  • 2021_Stirling_BMCBioInformatics Public

    Supplemental material for Stirling et al

    carpenterlab/2021_Stirling_BMCBioInformatics’s past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Jul 7, 2021
  • 2019_Doan_PNAS Public

    Label-free assessment of red blood cell storage lesions by deep learning

    carpenterlab/2019_Doan_PNAS’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 3 0 0 Updated Aug 25, 2020
  • 2019_caicedo_dsb Public

    Analysis of results of the Data Science Bowl 2018

    carpenterlab/2019_caicedo_dsb’s past year of commit activity
    Jupyter Notebook 20 5 0 0 Updated Jun 16, 2020
  • .github Public

    Default files are stored here, such as code of conduct

    carpenterlab/.github’s past year of commit activity
    0 0 0 0 Updated Oct 21, 2019
  • 2019_carpenter_eliceiri_ibiology Public

    Information about iBiology's freely available animation of a deep convolution neural network

    carpenterlab/2019_carpenter_eliceiri_ibiology’s past year of commit activity
    1 GPL-2.0 0 0 0 Updated Oct 16, 2019
  • open-science-rules Public

    Collaboratively written manuscript discussing Ten Simple Rules for Enabling Open Science in Biomedical Research

    carpenterlab/open-science-rules’s past year of commit activity
    HTML 5 2 22 0 Updated Jul 25, 2019
  • 2019_Lafarge_MIDL Public Forked from tueimage/cytoVAE

    Extended Variational Auto-Encoder for Single-Cell Representation

    carpenterlab/2019_Lafarge_MIDL’s past year of commit activity
    Python 0 GPL-3.0 4 0 0 Updated Jul 12, 2019
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