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    16 repositories

    • 2019_Doan_CytometryA

      Public
      Label-free monitoring of acute lymphoblastic leukemia by computer vision
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Mar 30, 2023Mar 30, 2023

    • 2018_Rohban_NatComm

      Public
      Capturing single-cell heterogeneity via data fusion improves image-based profiling
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •3•4•2•0•Updated Jul 6, 2022Jul 6, 2022

    • 2016_Bray_NatureProtocols

      Public
      Supporting data files, documentation, and updated tips for the Cell Painting protocol
      5•19•1•0•Updated Dec 3, 2021Dec 3, 2021

    • 2021_Stirling_BMCBioInformatics

      Public
      Supplemental material for Stirling et al
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 7, 2021Jul 7, 2021

    • 2019_Doan_PNAS

      Public
      Label-free assessment of red blood cell storage lesions by deep learning
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •3•1•0•0•Updated Aug 25, 2020Aug 25, 2020

    • 2019_caicedo_dsb

      Public
      Analysis of results of the Data Science Bowl 2018
      Jupyter Notebook
      •5•20•0•0•Updated Jun 16, 2020Jun 16, 2020

    • .github

      Public
      Default files are stored here, such as code of conduct
      0•0•0•0•Updated Oct 21, 2019Oct 21, 2019

    • 2019_carpenter_eliceiri_ibiology

      Public
      Information about iBiology's freely available animation of a deep convolution neural network
      GNU General Public License v2.0
      •0•1•0•0•Updated Oct 16, 2019Oct 16, 2019

    • open-science-rules

      Public
      Collaboratively written manuscript discussing Ten Simple Rules for Enabling Open Science in Biomedical Research
      reproducible-researchcomputational-biologycarpenter-labbiomedical-researchopen-science
      HTML
      •
      Other
      •2•5•22•0•Updated Jul 25, 2019Jul 25, 2019

    • 2019_Lafarge_MIDL

      Public
      Extended Variational Auto-Encoder for Single-Cell Representation
      Python
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Jul 12, 2019Jul 12, 2019

    • 2019_Caicedo_CytometryA

      Public
      Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images
      Jupyter Notebook
      •8•13•1•0•Updated Feb 4, 2019Feb 4, 2019

    • unet4nuclei

      Public
      U-net based segmentation of nuclei in microscopy images
      Jupyter Notebook
      •29•51•7•1•Updated Sep 13, 2018Sep 13, 2018

    • 2018_McQuin_PLOSBio

      Public
      3•6•0•0•Updated May 18, 2018May 18, 2018

    • 2017_Goldsborough_MLCB

      Public
      CytoGAN: Generative Modeling of Cell Images
      Python
      •2•0•1•0•Updated Dec 1, 2017Dec 1, 2017

    • 2017_Rohban_eLife

      Public
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •4•2•0•0•Updated Mar 31, 2017Mar 31, 2017

    • 2016_Pawlowski_MLCB

      Public
      Supporting materials for automated morphological profiling using pre-trained deep convolutional networks
      Jupyter Notebook
      •2•8•0•0•Updated Dec 2, 2016Dec 2, 2016