Skip to content

Issues: bmvdgeijn/WASP

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

44 Open 56 Closed
44 Open 56 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Does WASP allele-specific mapping work with long-reads as input?
#123 opened Sep 16, 2024 by dmanahan1
Changed output from filter_remapped_reads.py
#122 opened Apr 25, 2024 by kwcurrin
Is it feasible to use population-level SNP instead of individual sample's variant information?
#121 opened Jan 8, 2024 by zhangjy859
2
Error parsing genotype likelihoods
#120 opened Dec 5, 2023 by aanderson54
Is WASP suitable for WGBS data?
#118 opened Mar 4, 2023 by taolincj
VCF to HDF5 Error
#117 opened May 12, 2022 by PaulinaUrbana
error in rule "get_as_counts" / bam2h5.py
#116 opened Apr 4, 2022 by azurillandfriend
running snp2h5 in the mapping snakemake
#115 opened Apr 1, 2022 by azurillandfriend
1
filter_remapped_reads.py with bams created by HISAT2/ other mappers than Bowtie2
#114 opened Mar 23, 2022 by azurillandfriend
2
Whole genome sequencing data
#111 opened Jan 6, 2022 by maggietsui
1
find_intersecting_snps.py: for pair in product(new_reads[0][group], new_reads[1][group]): IndexError: list index out of range
#110 opened Nov 22, 2021 by jegalle
1
Represent phased blocks in VCF file
#109 opened Nov 3, 2021 by ramesh8v
1
Minor typo in Snakefile
#108 opened Jul 21, 2021 by rschwess
find_intersecting_snps.py
#107 opened Apr 22, 2021 by LunaPatton
3
filter_remapped_reads.py
#106 opened Mar 28, 2021 by p4rkerw
2
Small sample size
#105 opened Mar 3, 2021 by montenegrina
3
find_intersecting_snps.py outputting sam files rather than bam files
#104 opened Jan 14, 2021 by gbloeb
2
VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated
#103 opened Dec 18, 2020 by gbloeb
CHT Snakemake workflow getting stuck at adjust_read_counts
#102 opened Dec 2, 2020 by adamturner1
Missing step in CHT readme?
#100 opened Sep 22, 2020 by Zepeng-Mu
about NAs and 0s in CHT step 6 "extract_haplotype_read_counts"
#99 opened Jul 17, 2020 by lw157
constructing input files for pairwise eQTL testing
#95 opened May 21, 2020 by ghost
5
find_intersecting_snps.py taking longer than expected?
#94 opened Apr 28, 2020 by rwomersley
3
find_intersecting_snps.py : WARNING: unable to read from file
#93 opened Mar 31, 2020 by daphniamagna
4
Could not find test snp
#90 opened Nov 10, 2019 by SaideepGona
1
ProTip! Adding no:label will show everything without a label.