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Heya,
Just stumbled over a minor type in the Snakefile when using the text-based SNP input.
Line 80:
" --is_paired_end --is_sorted --output_dir {config[output_dir]}/find_intersecting_snps {input.bam} {config[snp_dir]}"
should be
" --is_paired_end --is_sorted --output_dir {config[output_dir]}/find_intersecting_snps --snp_dir {config[snp_dir]} {input.bam} "
or it will spit out an unrecognized argument error.
The text was updated successfully, but these errors were encountered:
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Heya,
Just stumbled over a minor type in the Snakefile when using the text-based SNP input.
Line 80:
" --is_paired_end --is_sorted --output_dir {config[output_dir]}/find_intersecting_snps {input.bam} {config[snp_dir]}"
should be
" --is_paired_end --is_sorted --output_dir {config[output_dir]}/find_intersecting_snps --snp_dir {config[snp_dir]} {input.bam} "
or it will spit out an unrecognized argument error.
The text was updated successfully, but these errors were encountered: