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Minor typo in Snakefile #108

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rschwess opened this issue Jul 21, 2021 · 0 comments
Open

Minor typo in Snakefile #108

rschwess opened this issue Jul 21, 2021 · 0 comments

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@rschwess
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Heya,

Just stumbled over a minor type in the Snakefile when using the text-based SNP input.

Line 80:

" --is_paired_end --is_sorted --output_dir {config[output_dir]}/find_intersecting_snps {input.bam} {config[snp_dir]}"

should be

" --is_paired_end --is_sorted --output_dir {config[output_dir]}/find_intersecting_snps --snp_dir {config[snp_dir]} {input.bam} "

or it will spit out an unrecognized argument error.

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