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Bulk: bioconda-utils v3.3.0 #55

Merged
merged 9 commits into from
Jun 3, 2024
Merged

Bulk: bioconda-utils v3.3.0 #55

merged 9 commits into from
Jun 3, 2024

Commits on Mar 27, 2024

  1. fix: update to bioconda-utils 2.13.1

    @johanneskoester
    johanneskoester authored Mar 27, 2024
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  2. update to bioconda-utils v2.13.2 (#50) 

    > ### Bug Fixes
> 
> * update anaconda-client=1.12 to fix uploads
([#970](https://www.github.com/bioconda/bioconda-utils/issues/970))
([06dcacc](https://www.github.com/bioconda/bioconda-utils/commit/06dcacca60c17c1a97770e14ae6348ac7acbe9a6))

refs:
- https://github.com/bioconda/bioconda-utils/releases/tag/v2.13.2
- bioconda/bioconda-utils#970

Signed-off-by: Marcel Bargull <[email protected]>
    @mbargull
    mbargull authored Mar 27, 2024
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Commits on Apr 1, 2024

  1. update to bioconda-utils v2.14.0 (#51)

    @aliciaaevans
    aliciaaevans authored Apr 1, 2024
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Commits on May 5, 2024

  1. update to bioconda-utils v2.15.0 (#52) 

    > ### Features
> 
> * Add support for .conda format
([#981](https://www.github.com/bioconda/bioconda-utils/issues/981))
([125c9ea](https://www.github.com/bioconda/bioconda-utils/commit/125c9ea5e362b7e5e63dfcbfae995fa3eeb58ce8))
> * choose worker recipes by depth level
([#950](https://www.github.com/bioconda/bioconda-utils/issues/950))
([4c51ae3](https://www.github.com/bioconda/bioconda-utils/commit/4c51ae31158b0154cf3ed381c4a3ad8b9bff7f14))
> * Update dependencies to latest versions
([#972](https://www.github.com/bioconda/bioconda-utils/issues/972))
([dc6ca07](https://www.github.com/bioconda/bioconda-utils/commit/dc6ca07a977dfbf7cbc2d25f884dc0333d611116))
> * Use conda/conda-build instead of mamba/conda-mambabuild
([#980](https://www.github.com/bioconda/bioconda-utils/issues/980))
([17cbc7f](https://www.github.com/bioconda/bioconda-utils/commit/17cbc7fb411864c7c22ff33b40682c0f43e016cc))
> 
> 
> ### Bug Fixes
> 
> * handle PR list with no items
([#975](https://www.github.com/bioconda/bioconda-utils/issues/975))
([869577a](https://www.github.com/bioconda/bioconda-utils/commit/869577a76933c2d7bcf386c1179ef454bdc18543))
> * Ignore src_cache for container-built packages
([125c9ea](https://www.github.com/bioconda/bioconda-utils/commit/125c9ea5e362b7e5e63dfcbfae995fa3eeb58ce8))
> * Ignore Zstandard-packed repodata artifact
([125c9ea](https://www.github.com/bioconda/bioconda-utils/commit/125c9ea5e362b7e5e63dfcbfae995fa3eeb58ce8))
> * use circleci api v1.1 to avoid login error
([#982](https://www.github.com/bioconda/bioconda-utils/issues/982))
([ebafe92](https://www.github.com/bioconda/bioconda-utils/commit/ebafe92ae01dc4a573e861764a4e837bd1321af3))

refs:
    - https://github.com/bioconda/bioconda-utils/releases/tag/v2.15.0

---------

 Fix conda index call; replace mamba with conda 

---------

Signed-off-by: Marcel Bargull <[email protected]>
    @mbargull
    mbargull authored May 5, 2024
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Commits on May 8, 2024

  1. update to bioconda-utils v2.15.1 (#53) 

    > ### Bug Fixes
> 
> * test_package for .tar.bz2 and .conda
([#983](https://www.github.com/bioconda/bioconda-utils/issues/983))
([c683290](https://www.github.com/bioconda/bioconda-utils/commit/c683290319d4f148644972b6caf626be6d1c6c99))

refs:
- https://github.com/bioconda/bioconda-utils/releases/tag/v2.15.1

Signed-off-by: Marcel Bargull <[email protected]>
    @mbargull
    mbargull authored May 8, 2024
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Commits on Jun 2, 2024

  1. update to bioconda-utils v3.2.0, remove defaults, switch to .conda p… 

    …ackage format (#54)

Changes since `bioconda-utils v2.15.1`:

> ### ⚠ BREAKING CHANGES
> 
> * Separate docs-only requirements (#986)
> * Remove defaults channel dependency (#985)
> 
> ### Miscellaneous Chores
> 
> * Remove defaults channel dependency
([#985](https://www.github.com/bioconda/bioconda-utils/issues/985))
([eb043dc](https://www.github.com/bioconda/bioconda-utils/commit/eb043dc2649bcdf63c11f19993660b58ec215cb7))
> * Separate docs-only requirements
([#986](https://www.github.com/bioconda/bioconda-utils/issues/986))
([09d108e](https://www.github.com/bioconda/bioconda-utils/commit/09d108e796cb4fce317c475b7d26bbaea124619c))
> 
> ### Features
> 
> * Update base-glibc-*-bash images to 3.1
([#996](https://www.github.com/bioconda/bioconda-utils/issues/996))
([e7c6ca0](https://www.github.com/bioconda/bioconda-utils/commit/e7c6ca0bf7bf2a0815c694634e45d7dff0aa483a))
> 
> * Update dependencies to latest versions
([#992](https://www.github.com/bioconda/bioconda-utils/issues/992))
([8c0fe35](https://www.github.com/bioconda/bioconda-utils/commit/8c0fe3548e8087a82050d8cefcfe01e909e61c01))
> 
> ### Bug Fixes
> 
> * Pass pkg_format to container-based build
([#994](https://www.github.com/bioconda/bioconda-utils/issues/994))
([e3f23ed](https://www.github.com/bioconda/bioconda-utils/commit/e3f23ed70300d97a8f99c5bace7dbba0f559bd19))

refs:
- https://github.com/bioconda/bioconda-utils/releases/tag/v3.2.0
- https://github.com/bioconda/bioconda-utils/releases/tag/v3.1.0
- https://github.com/bioconda/bioconda-utils/releases/tag/v3.0.0
- bioconda/bioconda-recipes#48214

----
Common config changes:
- Set `pkg_format=2` (i.e., build `.conda` not `.tar.bz2`)
- Remove `defaults` channel

---------

Signed-off-by: Marcel Bargull <[email protected]>
    @mbargull
    mbargull authored Jun 2, 2024
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  2. Postpone .conda builds until CDN support is fixed 

    refs:
- conda/infrastructure#950

Signed-off-by: Marcel Bargull <[email protected]>
    @mbargull
    mbargull committed Jun 2, 2024
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Commits on Jun 3, 2024

  1. Merge branch 'master' into bulk-3.3.0

    @aliciaaevans
    aliciaaevans committed Jun 3, 2024
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  2. update bulk to 3.3.0

    @aliciaaevans
    aliciaaevans committed Jun 3, 2024
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