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Abdennur Lab

Lab for Genomic Data Science

11 followers
https://abdenlab.org

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oxbow oxbow Public

Read specialized NGS formats as data frames in R, Python, and more.

Rust 63 8
dask-ngs dask-ngs Public

Scalable access to bioinformatics data with Dask and Oxbow

Python 1 3
VCFormer VCFormer Public

Read and flatten VCF data into DataFrames

Python 3
ipylangchat ipylangchat Public

Simple Jupyter chat UI for LangChain

Jupyter Notebook 11 2

Repositories

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Showing 10 of 14 repositories

ldsc-python3 Public Forked from bulik/ldsc
LD Score Regression (LDSC)

abdenlab/ldsc-python3’s past year of commit activity

Python 0 GPL-3.0 349 0 2 Updated Oct 31, 2024
snakemake-executor-plugin-lsf Public Forked from BEFH/snakemake-executor-plugin-lsf
A Snakemake executor plugin for submitting jobs to a LSF cluster

abdenlab/snakemake-executor-plugin-lsf’s past year of commit activity

Python 0 MIT 5 0 1 Updated Aug 7, 2024
ipylangchat Public
Simple Jupyter chat UI for LangChain

abdenlab/ipylangchat’s past year of commit activity

Jupyter Notebook 11 MIT 2 0 1 Updated Jul 3, 2024
oxbow Public
Read specialized NGS formats as data frames in R, Python, and more.

abdenlab/oxbow’s past year of commit activity

Rust 63 Apache-2.0 8 9 4 Updated Jun 30, 2024
eigen-tour Public

abdenlab/eigen-tour’s past year of commit activity

JavaScript 1 MIT 1 0 1 Updated May 19, 2024
deepC Public Forked from rschwess/deepC
A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence

abdenlab/deepC’s past year of commit activity

HTML 0 GPL-3.0 12 0 0 Updated Apr 12, 2024
dask-ngs Public
Scalable access to bioinformatics data with Dask and Oxbow

abdenlab/dask-ngs’s past year of commit activity

Python 1 MIT 3 1 5 Updated Mar 4, 2024
4dn-hg-jscatter-demo Public

abdenlab/4dn-hg-jscatter-demo’s past year of commit activity

Jupyter Notebook 2 0 0 1 Updated Mar 1, 2024
VCFormer Public
Read and flatten VCF data into DataFrames

abdenlab/VCFormer’s past year of commit activity

Python 3 MIT 0 0 0 Updated Aug 11, 2023
inspectro-nf-thomas Public Forked from open2c/inspectro-nf

abdenlab/inspectro-nf-thomas’s past year of commit activity

Python 0 2 0 0 Updated Jul 11, 2023

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