Feature/noaa csp aws rtd update

docs/source/noaa_csp.rst

@@ -190,7 +190,7 @@ global-workflow execution may be loaded as follows.
 
    user@host:$ module unuse /opt/cray/craype/default/modulefiles
    user@host:$ module unuse /opt/cray/modulefiles
-   user@host:$ module use /contrib/global-workflow/spack-stack/miniconda/modulefiles/miniconda
+   user@host:$ module use /contrib/emc_static/spack-stack/miniconda/modulefiles/miniconda
    user@host:$ module load py39_4.12.0
    user@host:$ module load rocoto/1.3.3
 

jobs/JGLOBAL_ATMOSANL_POST

@@ -0,0 +1,105 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+source "${HOMEgfs}/ush/jjob_header.sh" -e "post" -c "base post"
+
+
+####################################
+# Specify version numbers
+####################################
+export crtm_ver=${post_crtm_ver:-v2.2.6}
+export gfs_ver=${gfs_ver:-v15.0.0}
+export hwrf_ver=${hwrf_ver:-v11.0.5}
+export g2tmpl_ver=${g2tmpl_ver:-v1.5.0}
+
+##############################################
+# Set variables used in the exglobal script
+##############################################
+export CDUMP=${RUN/enkf}
+
+##############################################
+# Begin JOB SPECIFIC work
+##############################################
+export APRUNP=${APRUN:-${APRUN_NP}}
+export RERUN=${RERUN:-NO}
+export HOMECRTM=${HOMECRTM:-${PACKAGEROOT}/lib/crtm/${crtm_ver}}
+export FIXCRTM=${CRTM_FIX:-${HOMECRTM}/fix}
+export PARMpost=${PARMpost:-${HOMEgfs}/parm/post}
+export INLINE_POST=${WRITE_DOPOST:-".false."}
+
+# Construct COM variables from templates
+YMD=${PDY} HH=${cyc} generate_com -rx COM_ATMOS_RESTART COM_ATMOS_ANALYSIS COM_ATMOS_HISTORY COM_ATMOS_MASTER
+if [[ ! -d ${COM_ATMOS_MASTER} ]]; then mkdir -m 775 -p "${COM_ATMOS_MASTER}"; fi
+
+if [[ ${GOESF} == "YES" ]]; then
+  YMD=${PDY} HH=${cyc} generate_com -rx COM_ATMOS_GOES
+  if [[ ! -d ${COM_ATMOS_GOES} ]]; then mkdir -m 775 -p "${COM_ATMOS_GOES}"; fi
+fi
+
+for grid in '0p25' '0p50' '1p00'; do
+  prod_dir="COM_ATMOS_GRIB_${grid}"
+  GRID=${grid} YMD=${PDY} HH=${cyc} generate_com -rx "${prod_dir}:COM_ATMOS_GRIB_GRID_TMPL"
+  if [[ ! -d "${!prod_dir}" ]]; then mkdir -m 775 -p "${!prod_dir}"; fi
+done
+
+if [ "${RUN}" = gfs ];then
+  export FHOUT_PGB=${FHOUT_GFS:-3} #Output frequency of gfs pgb file at 1.0 and 0.5 deg.
+fi
+if [ "${RUN}" = gdas ]; then
+  export IGEN_GFS="gfs_avn"
+  export IGEN_ANL="anal_gfs"
+  export IGEN_FCST="gfs_avn"
+  export IGEN_GDAS_ANL="anal_gdas"
+  export FHOUT_PGB=${FHOUT:-1} #Output frequency of gfs pgb file at 1.0 and 0.5 deg.
+fi
+
+if [ "${GRIBVERSION}" = grib2 ]; then
+  export IGEN_ANL="anal_gfs"
+  export IGEN_FCST="gfs_avn"
+  export IGEN_GFS="gfs_avn"
+fi
+
+#######################################
+# Specify Restart File Name to Key Off
+#######################################
+# TODO Improve the name of this variable
+export restart_file=${COM_ATMOS_HISTORY}/${RUN}.t${cyc}z.atm.logf
+
+####################################
+# Specify Timeout Behavior of Post
+#
+# SLEEP_TIME - Amount of time to wait for
+#              a restart file before exiting
+# SLEEP_INT  - Amount of time to wait between
+#              checking for restart files
+####################################
+export SLEEP_TIME=900
+export SLEEP_INT=5
+
+
+###############################################################
+# Run relevant exglobal script
+
+"${HOMEgfs}/scripts/ex${RUN}_atmosanl_post.sh"
+status=$?
+(( status != 0 )) && exit "${status}"
+
+##############################################
+# End JOB SPECIFIC work
+##############################################
+
+##############################################
+# Final processing
+##############################################
+if [ -e "${pgmout}" ]; then
+  cat "${pgmout}"
+fi
+
+##########################################
+# Remove the Temporary working directory
+##########################################
+cd "${DATAROOT}" || exit 1
+[[ "${KEEPDATA:-NO}" = "NO" ]] && rm -rf "${DATA}"
+
+
+exit 0

jobs/rocoto/atmanlpost.sh

@@ -0,0 +1,21 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+
+###############################################################
+## NCEP atmanlpost driver script
+###############################################################
+
+# Source FV3GFS workflow modules
+. ${HOMEgfs}/ush/load_fv3gfs_modules.sh
+status=$?
+[[ ${status} -ne 0 ]] && exit ${status}
+
+export job="atmanlpost"
+export jobid="${job}.$$"
+
+${HOMEgfs}/jobs/JGLOBAL_ATMOSANL_POST
+status=$?
+[[ ${status} -ne 0 ]] && exit ${status}
+
+exit 0