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refactor_global_as_function_inputs #175

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refactor_global_as_function_inputs #175

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6f99f13
refactor_global_as_function_inputs
yijianzeng May 24, 2023
15ba5fa
select_input_last_two_options_swap
yijianzeng May 24, 2023
accf754
Fix_Style_Issue
yijianzeng May 24, 2023
64ee609
ResidualMC(1)_index_needed/added
yijianzeng May 30, 2023
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16 changes: 12 additions & 4 deletions src/+equations/calc_rssrbs.m
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Original file line number Diff line number Diff line change
@@ -1,5 +1,13 @@
function [rss, rbs] = calc_rssrbs(SMC, LAI, rbs)
global SaturatedMC ResidualMC fieldMC
function [rss, rbs] = calc_rssrbs(SMC, LAI, rbs, ResidualMC, fieldMC)
%{
This function is to calculate surface resistance, following C. van der Tol
et al. 2014 (BG). The emperical parameters "aa, 4.1, and 4.3" are
user-defined. And these parameters can be calibrated during winter season
when LAI is low.
%}
aa = 3.8;
rss = exp((aa + 4.1) - aa * (SMC - ResidualMC(1)) / (fieldMC(1) - ResidualMC(1)));
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rbs = rbs * LAI / 4.3;
bb = 4.1;
cc = 4.3;

rss = exp((aa + bb) - aa * (SMC - ResidualMC(1)) / (fieldMC(1) - ResidualMC(1)));
rbs = rbs * LAI / cc;
4 changes: 2 additions & 2 deletions src/+io/select_input.m
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
function [SoilProperties, leafbio, canopy, meteo, angles, SpaceTimeInfo] = select_input(ScopeParameters, digitsVector, canopy, options, SpaceTimeInfo, SoilProperties)
function [SoilProperties, leafbio, canopy, meteo, angles, SpaceTimeInfo] = select_input(ScopeParameters, digitsVector, canopy, options, SoilProperties, SpaceTimeInfo)
global Theta_LL theta_s0
SoilProperties.spectrum = ScopeParameters.spectrum(digitsVector(16));
SoilProperties.rss = ScopeParameters.rss(digitsVector(17));
Expand Down Expand Up @@ -82,7 +82,7 @@
SoilProperties.GAM = equations.Soil_Inertia0(SoilProperties.cs, SoilProperties.rhos, SoilProperties.lambdas);
end
if options.calc_rss_rbs
[SoilProperties.rss, SoilProperties.rbs] = equations.calc_rssrbs(SoilProperties.SMC, canopy.LAI, SoilProperties.rbs);
[SoilProperties.rss, SoilProperties.rbs] = equations.calc_rssrbs(SoilProperties.SMC, canopy.LAI, SoilProperties.rbs, SoilProperties.ResidualMC, SoilProperties.fieldMC);
end

if leafbio.Type
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4 changes: 2 additions & 2 deletions src/STEMMUS_SCOPE.m
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Original file line number Diff line number Diff line change
Expand Up @@ -212,7 +212,7 @@
ScopeParametersNames = fieldnames(ScopeParameters);
if options.simulation == 1
vi = ones(length(ScopeParametersNames), 1);
[soil, leafbio, canopy, meteo, angles, xyt] = io.select_input(ScopeParameters, vi, canopy, options);
[soil, leafbio, canopy, meteo, angles, xyt] = io.select_input(ScopeParameters, vi, canopy, options, SoilProperties);
[ScopeParameters, xyt, canopy] = io.loadTimeSeries(ScopeParameters, leafbio, soil, canopy, meteo, constants, F, xyt, path_input, options);
else
soil = struct;
Expand Down Expand Up @@ -512,7 +512,7 @@
if options.simulation == 0
vi(vmax == telmax) = k;
end
[soil, leafbio, canopy, meteo, angles, xyt] = io.select_input(ScopeParameters, vi, canopy, options, xyt, soil);
[soil, leafbio, canopy, meteo, angles, xyt] = io.select_input(ScopeParameters, vi, canopy, options, soil, xyt);
if options.simulation ~= 1
fprintf('simulation %i ', k);
fprintf('of %i \n', telmax);
Expand Down