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tweak vignettes

tweak vignettes #994

Workflow file for this run

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
#
# NOTE: This workflow is overkill for most R packages and
# check-standard.yaml is likely a better choice.
# usethis::use_github_action("check-standard") will install it.
on:
push:
branches: [main, master]
pull_request:
branches: [main, master]
workflow_dispatch:
inputs:
extra-packages:
description: 'extra package to install for the runs (like a dev version of one of the deps) - comma separated'
required: false
type: string
name: R-CMD-check
concurrency:
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.run_id }}
cancel-in-progress: true
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})${{ github.event.inputs.extra-packages && ' - with some extra packages'|| ''}}
strategy:
fail-fast: false
matrix:
config:
- {os: windows-latest, r: 'release'}
- {os: macOS-latest, r: 'release'}
- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'oldrel-1'}
- {os: ubuntu-latest, r: 'oldrel-2'}
- {os: ubuntu-latest, r: 'oldrel-3'}
- {os: ubuntu-latest, r: 'oldrel-4'}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
DISPLAY: ':99.0'
RGL_USE_NULL: TRUE
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes
steps:
- uses: actions/checkout@v4
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true
- uses: r-lib/actions/setup-tinytex@v2-branch
env:
# install full prebuilt version
TINYTEX_INSTALLER: TinyTeX
- if: github.event.inputs.extra-packages
run: |
echo "::notice::Running with the following extra packages for pak: ${{ github.event.inputs.extra-packages }}"
shell: bash
- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: >
any::rcmdcheck,
gridSVG=?ignore-before-r=4.0.0,
targets=?ignore-before-r=4.0.0,
JuliaCall=?ignore-before-r=4.0.0,
${{ github.event.inputs.extra-packages }}
needs: check
- uses: r-lib/actions/check-r-package@v2
env:
_R_CHECK_FORCE_SUGGESTS_: false
with:
upload-snapshots: true
- name: Test coverage
if: success() && runner.os == 'Linux' && matrix.config.r == 'release'
run: |
pak::pak("covr")
covr::codecov()
shell: Rscript {0}