deepFPlearn v2.1

What's Changed

• Fixing package releases and names by @mai00fti in #28
• sync environment.yml by @bernt-matthias in #34
• add DOI to reference by @tom-mohr in #40
• Galaxy format by @soulios in #42

New Contributors

• @tom-mohr made their first contribution in #40

Full Changelog: v2.0...v2.1

deepFPlearn v2.0

What's Changed

• Soulios graphs by @soulios in (#22, #23)
  • Introduction of graph neural networks and alternative splitting strategies - deepFPlearn+
• Updates and new GitHub workflows (@bernt-matthias in #9, @bernt-matthias in #12)
• Bump requirements (tensorflow-gpu from 2.6.0 to 2.7.2 #17, numpy from 1.19.5 to 1.22.0 #18, tensorflow-gpu from 2.7.2 to 2.9.3 #19)

New Contributors

• @soulios made their first contribution in #22

Full Changelog: v1.2...v2.0

v1.2: Manuscript release

Revised implementation including more sophisticated hyperparameter tuning, bug fixes, output optimizations.

Manuscript release

In this release, we fixed minor issues regarding the command line argument handling.

Manuscript release

v1.0

minor edits

Manuscript release

v0.3

Prune docker containers on singularity build

Manuscript release

In this release an automatic down sampling strategy was added for extremely unbalanced data sets - like the bench marking data sets for the deepFPlearn publication.

Initial release

v0.1

add 'cid' to the targets2Bignored, insert dir/file test in run shell …