Merge pull request #47 from yguitton/CP-Seeker_Damien

Validation des précédents commit Validation des issues : - [x] Réponse à l'Issue : #38 - [x] Réponse à l'Issue : #39 - [x] Réponse à l'Issue : #40 - [x] Réponse à l'Issue : #41 - [x] Réponse à l'Issue : #42 - [x] Réponse à l'Issue : #43
yguitton · Apr 23, 2024 · c42c74a · c42c74a
2 parents 27ad25f + 40fa11e
commit c42c74a
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diff --git a/.gitignore b/.gitignore
@@ -1,3 +1,8 @@
 *.sqlite
 *.sqlite-shm
 *.sqlite-wal
+Error_log/*
+export/*
+Error_log/error.log
+/Error_log
+.Rproj.user
diff --git a/NOT-SCI-004 v003 CP-Seeker Documentation.pdf b/NOT-SCI-004 v003 CP-Seeker Documentation.pdf
diff --git a/R-Portable/library/Rcpp/CITATION b/R-Portable/library/Rcpp/CITATION
@@ -9,13 +9,13 @@ citEntry(entry = "Article",
          volume       = "40",
          number       = "8",
          pages        = "1--18",
-         url          = "https://www.jstatsoft.org/v40/i08/",
+         url          = "http://www.jstatsoft.org/v40/i08/",
          doi          = "10.18637/jss.v040.i08",
 
          textVersion  = paste("Dirk Eddelbuettel and Romain Francois (2011).",
                               "Rcpp: Seamless R and C++ Integration.",
                               "Journal of Statistical Software, 40(8), 1-18.",
-                              "URL https://www.jstatsoft.org/v40/i08/.")
+                              "URL http://www.jstatsoft.org/v40/i08/.")
 )
 
 citEntry(entry = "Book",
@@ -36,16 +36,17 @@ citEntry(entry = "Article",
          title       = "{Extending \textit{R} with \textit{C++}: A Brief Introduction to \textit{Rcpp}}",
          author      = personList(as.person("Dirk Eddelbuettel"),
                                   as.person("James Joseph Balamuta")),
-         journal     = "The American Statistician",
-         year        = "2018",
-         volume      = "72",
-         number      = "1",
-         pages       = "28-36",
-         url         = "https://doi.org/10.1080/00031305.2017.1375990",
-         doi         = "10.1080/00031305.2017.1375990",
+         journal     = "PeerJ Preprints",
+         year        = "2017",
+         month       = "aug",
+         volume      = "5",
+         pages       = "e3188v1",
+         issn        = "2167-9843",
+         url         = "https://doi.org/10.7287/peerj.preprints.3188v1",
+         doi         = "10.7287/peerj.preprints.3188v1",
 
-         textVersion = paste("Dirk Eddelbuettel and James Joseph Balamuta (2018).",
+         textVersion = paste("Dirk Eddelbuettel and James Joseph Balamuta (2017).",
                              "Extending R with C++: A Brief Introduction to Rcpp.",
-                             "The American Statistician. 72(1).",
-                             "URL https://doi.org/10.1080/00031305.2017.1375990.")
+                             "PeerJ Preprints 5:e3188v1.",
+                             "URL https://doi.org/10.7287/peerj.preprints.3188v1.")
 )
diff --git a/R-Portable/library/Rcpp/DESCRIPTION b/R-Portable/library/Rcpp/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: Rcpp
 Title: Seamless R and C++ Integration
-Version: 1.0.6
-Date: 2021-01-14
+Version: 1.0.5
+Date: 2020-07-01
 Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou,
  Nathan Russell, Douglas Bates and John Chambers
 Maintainer: Dirk Eddelbuettel <[email protected]>
@@ -10,7 +10,7 @@ Description: The 'Rcpp' package provides R functions as well as C++ classes whic
  mapped back and forth to C++ equivalents which facilitates both writing of new
  code as well as easier integration of third-party libraries. Documentation
  about 'Rcpp' is provided by several vignettes included in this package, via the
- 'Rcpp Gallery' site at <https://gallery.rcpp.org>, the paper by Eddelbuettel and
+ 'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel and
  Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013,
  <doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018,
  <doi:10.1080/00031305.2017.1375990>); see 'citation("Rcpp")' for details.
@@ -23,8 +23,8 @@ BugReports: https://github.com/RcppCore/Rcpp/issues
 MailingList: [email protected]
 RoxygenNote: 6.1.1
 NeedsCompilation: yes
-Packaged: 2021-01-14 13:44:02 UTC; edd
+Packaged: 2020-07-01 16:50:09.72105 UTC; edd
 Repository: CRAN
-Date/Publication: 2021-01-15 13:10:13 UTC
-Built: R 3.6.3; x86_64-w64-mingw32; 2021-03-29 18:25:44 UTC; windows
+Date/Publication: 2020-07-06 13:40:08 UTC
+Built: R 3.6.3; x86_64-w64-mingw32; 2020-09-29 02:05:41 UTC; windows
 Archs: i386, x64
diff --git a/R-Portable/library/Rcpp/MD5 b/R-Portable/library/Rcpp/MD5
@@ -1,46 +1,46 @@
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-8d09a2327be16a209d74a001f6cf9f9e *DESCRIPTION
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 79a2c43b0ffea347abb61cf92f131e7e *doc/index.html
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 b6763e6916890c631fdc3f2643803b1a *html/R.css
 46bdb787a2fde9b6cd8ff24039e84aa0 *include/Rcpp.h
 7acf90ededacb240b082c50653a1fe05 *include/Rcpp/Benchmark/Timer.h
-ae223bb901fbed207125953034e3e00d *include/Rcpp/DataFrame.h
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 e4195b2fee650b67d709d7bd529f3de6 *include/Rcpp/Dimension.h
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@@ -138,7 +138,7 @@ da9fbe7d88027204751989a252a8c545 *include/Rcpp/StringTransformer.h
 016374544bddc85df03012bf1e70377c *include/Rcpp/Symbol.h
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 3fa2caaea31d12b63d0a049c1da3c878 *include/Rcpp/api/bones/Date.h
@@ -167,7 +167,7 @@ c9af45da88ea151bb2f8cd27900257e8 *include/Rcpp/api/meat/proxy.h
 90c153091bc3fb1e123fef9dc40394e6 *include/Rcpp/barrier.h
 fa7b26bbe19f908b9c00ead2fe2717ac *include/Rcpp/clone.h
 1b3b2bee1fc9bd3f231c2a33ca572281 *include/Rcpp/complex.h
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 0d754f1a9266c3e1bbc6946ba1304ab5 *include/Rcpp/date_datetime/date_datetime.h
@@ -183,7 +183,7 @@ fabe6bb18d2e4714327930f192754072 *include/Rcpp/exceptions/cpp11/exceptions.h
 b0b0b9732bb0201a5dbecefd41ed1a6f *include/Rcpp/generated/DottedPair__ctors.h
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-b8c60809df30845e119f0b477716bb65 *include/Rcpp/generated/InternalFunction__ctors.h
+0d22b3726148557c2c9e2d400bf64d59 *include/Rcpp/generated/InternalFunction__ctors.h
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 42e058cc4ef74a4b09e9d3b102cd417a *include/Rcpp/generated/Vector__create.h
@@ -209,7 +209,7 @@ be267828e3e200668df1d37c3b90edd0 *include/Rcpp/internal/wrap.h
 14b302e7f5cca681f122cccde5418cbd *include/Rcpp/internal/wrap_end.h
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 c852659f0876b4dd0a3d3d99e972d1cb *include/Rcpp/is.h
-24e8a8c1f4a580954091edb9dae2cfd9 *include/Rcpp/lang.h
+38702538aff2c6031c094ecdd79797c8 *include/Rcpp/lang.h
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 623f4ca3111e4a28afe10133897a8f89 *include/Rcpp/macros/config.hpp
@@ -239,7 +239,7 @@ f98a219d68a1c072d515e3dfd445b741 *include/Rcpp/module/Module_generated_class_sig
 54bcedd25514753ee10ed273511f8bbd *include/Rcpp/module/Module_generated_function.h
 f34764fa42d6f6fc0904264099253778 *include/Rcpp/module/Module_generated_get_signature.h
 2af8acdcd6b282fcad59eb353de02ca0 *include/Rcpp/module/Module_generated_method.h
-d9cb32851ba55296536d06c3d61ae711 *include/Rcpp/module/class.h
+ad5b1eeb562577cd67c7bf64b2d06fca *include/Rcpp/module/class.h
 b021df8570d99c4821e25c137aa45a01 *include/Rcpp/module/class_Base.h
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 52cb1005938ee160ac29547e92d18584 *include/Rcpp/platform/compiler.h
@@ -484,10 +484,10 @@ fe60090372703d0fd887c32e45f944a3 *include/Rcpp/vector/generic_proxy.h
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@@ -502,7 +502,7 @@ ceccb01282e3e574aa78fec0102df6da *skeleton/Rcpp_modules_examples.Rd
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@@ -603,7 +603,7 @@ d43f4463ec22a001f10f70e5968b741e *tinytest/test_as.R
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diff --git a/R-Portable/library/Rcpp/Meta/package.rds b/R-Portable/library/Rcpp/Meta/package.rds
diff --git a/R-Portable/library/Rcpp/Meta/vignette.rds b/R-Portable/library/Rcpp/Meta/vignette.rds
diff --git a/R-Portable/library/Rcpp/NEWS.Rd b/R-Portable/library/Rcpp/NEWS.Rd
@@ -3,40 +3,6 @@
 \newcommand{\ghpr}{\href{https://github.com/RcppCore/Rcpp/pull/#1}{##1}}
 \newcommand{\ghit}{\href{https://github.com/RcppCore/Rcpp/issues/#1}{##1}}
 
-\section{Changes in Rcpp patch release version 1.0.6 (2021-01-14)}{
-  \itemize{
-    \item Changes in Rcpp API:
-    \itemize{
-      \item Replace remaining few uses of \code{EXTPTR_PTR} with
-      \code{R_ExternalPtrAddr} (Kevin in \ghpr{1098} fixing
-      \ghit{1097}).
-      \item Add \code{push_back} and \code{push_front} for
-      \code{DataFrame} (Walter Somerville in \ghpr{1099} fixing
-      \ghit{1094}).
-      \item Remove a misleading-to-wrong comment (Mattias Ellert in
-      \ghpr{1109} cleaning up after \ghpr{1049}).
-      \item Address a sanitizer report by initializing two private
-      \code{bool} variables (Benjamin Christoffersen in \ghpr{1113}).
-      \item External pointer finalizer toggle default values were
-      corrected to true (Dirk in \ghpr{1115}).
-    }
-    \item Changes in Rcpp Documentation:
-    \itemize{
-      \item Several URLs were updated to https and/or new addresses (Dirk).
-    }
-    \item Changes in Rcpp Deployment:
-    \itemize{
-      \item Added GitHub Actions CI using the same container-based setup
-      used previously, and also carried code coverage over (Dirk in
-      \ghpr{1128}).
-    }
-    \item Changes in Rcpp support functions:
-    \itemize{
-      \item \code{Rcpp.package.skeleton()} avoids warning from R. (Dirk)
-    }
-  }
-}
-
 \section{Changes in Rcpp patch release version 1.0.5 (2020-07-01)}{
   \itemize{
     \item Changes in Rcpp API:

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