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Issues list

failed to open output files to write !
#73 opened Jun 11, 2024 by Bang9suK
1
Output MSIsensor-pro (unstable, dis and all) documentation Improvements or additions to documentation
#72 opened Apr 26, 2024 by OrangePomeranian
Should masked fasta or unmasked fasta be used for scanning?
#70 opened Mar 23, 2024 by Weiyifan
failed to open file: /local/scrath/test/homo.list
#68 opened Jan 15, 2024 by songeric1107
Does the msi site for a target panel need to be filtered?
#67 opened Nov 7, 2023 by h170607
Remove microsatellites with CpG context
#66 opened Nov 1, 2023 by bounlu
Matched vs tumor_only scores
#65 opened Oct 19, 2023 by bounlu
Parallelization of samples for baseline enhancement New feature or request
#64 opened Oct 17, 2023 by bounlu
2
Threshold TCGA
#62 opened May 9, 2023 by MirandaStobbe
1
issues on toy dataset
#61 opened Apr 19, 2023 by nservant
2
Baseline for tumor only
#60 opened Mar 24, 2023 by da-otero
5
diffrent results by using diffrent homopolymer and microsates files(just diff in microsates size)
#58 opened Mar 14, 2023 by ZooJooFoo
1
Baseline step for tumor-only pipeline
#55 opened Jan 24, 2023 by komalsrathi
2
A few questions about baseline making
#52 opened Dec 9, 2022 by RADIOMUMM
1
bam file error when running "msisensor-pro baseline" step
#46 opened Jul 8, 2022 by YXbioinfor
2
The MSI loci both in output.prefix_germline and output.prefix_somatic
#45 opened Jun 28, 2022 by litun-fkby
2
Minimum homopolymer length (msisensor-pro baseline is killed if it is set to 5)
#44 opened Jun 23, 2022 by emesexochitl
2
Could it run on msisensor-pro that using different type of data between the 2nd step ( build baseline ) and the 3rd step ( evaluate MSI )
#43 opened Mar 31, 2022 by bio-rain
2
MSISensor normalization issue. Please help!
#42 opened Feb 5, 2022 by seifudd
1
Index not found with symlinked files enhancement New feature or request
#39 opened Oct 15, 2021 by fbdtemme
1
How to classify the MSI high and MSI low ?
#37 opened Sep 23, 2021 by wangxiaoshine
1
Cannot open configure file in msisensor-pro 1.2.0
#36 opened Sep 1, 2021 by Dichromatism
3
conda install failed
#34 opened Aug 5, 2021 by wqrao
1
pro scan context_length = 9 failed, shorter -c induces systematic errors
#27 opened Apr 21, 2021 by ruolin
4
exclude secondary alignment and have mapq cutoff documentation Improvements or additions to documentation
#26 opened Apr 16, 2021 by ruolin
4
ProTip! no:milestone will show everything without a milestone.