CI: setup GHA (#6)

* CI: setup GHA

* fix suffixes

* avoid duplication

* ignore tests in coverage

* add linting pre-commit and check

* fix pre-commit

* use bash as a default shell

* typo

* include isort

* remove linting and use pre-commit.ci instead

* use pytest-reportlog

* include pytest-reportlog in latest

* add id to run tests

.github/workflows/tests.yaml

@@ -0,0 +1,56 @@
+name: Tests
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches:
+      - "*"
+
+  schedule:
+    - cron: "59 23 * * 3"
+
+jobs:
+  Tests:
+    name: ${{ matrix.os }}, ${{ matrix.environment-file }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [macos-latest, ubuntu-latest, windows-latest]
+        environment-file: [ci/latest.yaml]
+        include:
+          - environment-file: ci/dev.yaml
+            os: ubuntu-latest
+    defaults:
+      run:
+        shell: bash -l {0}
+
+    steps:
+      - name: checkout repo
+        uses: actions/checkout@v2
+
+      - name: setup micromamba
+        uses: mamba-org/provision-with-micromamba@main
+        with:
+          environment-file: ${{ matrix.environment-file }}
+          micromamba-version: "latest"
+          channel-priority: "flexible"
+
+      - name: Install xvec
+        run: pip install .
+
+      - name: run tests
+        id: status
+        run: pytest -v . -m "not request" --cov=xvec --cov-append --cov-report term-missing --cov-report xml --color=yes --report-log pytest-log.jsonl
+
+      - uses: codecov/codecov-action@v3
+
+      - name: Generate and publish the report
+        if: |
+          failure()
+          && steps.status.outcome == 'failure'
+          && github.event_name == 'schedule'
+          && github.repository_owner == 'martinfleis'
+        uses: xarray-contrib/issue-from-pytest-log@v1
+        with:
+          log-path: pytest-log.jsonl

.pre-commit-config.yaml

@@ -0,0 +1,20 @@
+files: 'xvec\/'
+repos:
+  - repo: https://github.com/python/black
+    rev: 22.10.0
+    hooks:
+      - id: black
+        language_version: python3
+  - repo: https://github.com/pycqa/flake8
+    rev: 5.0.4
+    hooks:
+      - id: flake8
+        language: python_venv
+  - repo: https://github.com/pycqa/isort
+    rev: 5.10.1
+    hooks:
+      - id: isort
+        language_version: python3
+
+ci:
+  autofix_prs: false

ci/dev.yaml

@@ -0,0 +1,18 @@
+name: xvec_dev
+channels:
+  - conda-forge
+  - conda-forge/label/shapely_dev
+dependencies:
+  - python
+  # to build from source
+  - cython
+  - geos
+  # testing
+  - pytest
+  - pytest-cov
+  - pytest-xdist
+  - pytest-reportlog
+  - pip
+  - pip:
+      - git+https://github.com/shapely/shapely.git@main
+      - git+https://github.com/pydata/xarray.git@main

ci/latest.yaml

@@ -0,0 +1,14 @@
+name: xvec
+channels:
+  - conda-forge
+  - conda-forge/label/shapely_dev
+dependencies:
+  - python
+  # required
+  - shapely=2
+  - xarray
+  # testing
+  - pytest
+  - pytest-cov
+  - pytest-xdist
+  - pytest-reportlog

environment.yml

@@ -18,3 +18,7 @@ dependencies:
   - numpydoc
   - pydata-sphinx-theme
   - geopandas
+  # linting
+  - flake8
+  - black
+  - isort

pyproject.toml

@@ -39,4 +39,7 @@ Repository = "https://github.com/martinfleis/xvec"
 include = [
     "xvec",
     "xvec.*",
-]
+]
+
+[tool.coverage.run]
+omit = ["xvec/tests/*"]