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@wtsi-npg

Wellcome Sanger Institute - NPG

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  1. illumina2bam illumina2bam Public

    Generate and process BAM files from Illumina sequencing instrument files

    Java 23 18

  2. baton baton Public

    iRODS client programs and API

    C 19 19

  3. npg_seq_pipeline npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    Perl 9 17

  4. bambi bambi Public

    Process Illumina instrument data into SAM/BAM/CRAM files.

    C 9 14

  5. Percolate Percolate Public archive

    A parallel workflow management application.

    Ruby 6 4

  6. genotyping genotyping Public

    Components of the WTSI genotype analysis pipeline.

    Perl 5 7

Repositories

Showing 10 of 78 repositories
  • ml_warehouse Public

    Perl DBIx binding to a warehouse housing data from multiple LIM systems

    wtsi-npg/ml_warehouse’s past year of commit activity
    Perl 3 13 1 2 Updated Jul 25, 2024
  • npg_ml_warehouse Public

    Analysis results loader for the multi-lims warehouse, see ml_warehouse project for the warehouse details.

    wtsi-npg/npg_ml_warehouse’s past year of commit activity
    Perl 0 13 9 2 Updated Jul 25, 2024
  • npg_qc Public

    QC checks and metrics for Illumina NGS data

    wtsi-npg/npg_qc’s past year of commit activity
    Perl 5 17 20 3 Updated Jul 25, 2024
  • perl-irods-wrap Public

    Perl iRODS Client Wrapper Library

    wtsi-npg/perl-irods-wrap’s past year of commit activity
    Perl 4 18 10 2 Updated Jul 25, 2024
  • npg_tracking Public

    WTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking

    wtsi-npg/npg_tracking’s past year of commit activity
    Perl 3 19 12 3 Updated Jul 25, 2024
  • npg_langqc Public
    wtsi-npg/npg_langqc’s past year of commit activity
    Python 0 GPL-3.0 4 2 1 Updated Jul 24, 2024
  • npg_notifications Public
    wtsi-npg/npg_notifications’s past year of commit activity
    Python 0 1 0 0 Updated Jul 24, 2024
  • npg_porch_cli Public

    A command-line client to enable communication with the npg_porch API.

    wtsi-npg/npg_porch_cli’s past year of commit activity
    Python 0 1 0 0 Updated Jul 24, 2024
  • npg-irods-python Public

    Applications for the management of data and metadata in iRODS

    wtsi-npg/npg-irods-python’s past year of commit activity
    Python 1 GPL-3.0 7 2 1 Updated Jul 22, 2024
  • partisan Public

    A Python client API for iRODS

    wtsi-npg/partisan’s past year of commit activity
    Python 1 GPL-3.0 5 2 0 Updated Jul 22, 2024
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