The Workflow4Metabolomics, W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform.
Tool using the HMDB Library Search.
Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
Homepage: https://galaxyproject.org/
Conda is package manager that among many other things can be used to manage Python packages.
#To install miniconda2
#http://conda.pydata.org/miniconda.html
#To install the tool dependencies using conda:
conda install perl-lwp-simple perl-lwp-useragent perl-uri-url perl-soap-lite perl-list-moreutils perl-text-csv perl perl-html-template
#To set an environment:
conda create -n tool-bank-hmdb perl-soap-lite perl-list-moreutils perl-json perl-html-template`
#To activate the environment:
. activate tool-bank-hmdb
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- Franck Giacomoni @fgiacomoni - French Metabolomics and Fluxomics Infrastructure (MetaboHUB) - La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)
- Marion Landi - LIFEGRID grant - La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)