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Manage tricky selection for LangevinSpeciesContext step class, stub f…
…or Molecular structures properties panel
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77 changes: 77 additions & 0 deletions
77
vcell-client/src/main/java/cbit/vcell/graph/gui/SsldLargeShapePanel.java
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,77 @@ | ||
| package cbit.vcell.graph.gui; | ||
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| import javax.swing.*; | ||
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| public class SsldLargeShapePanel extends JPanel { | ||
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| // private boolean showDifferencesOnly = false; | ||
| // private boolean bShowMoleculeColor = false; | ||
| // private boolean bShowNonTrivialOnly = false; | ||
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| // zooming the shape, 0 means normal size, a negative number means smaller shape | ||
| private static final int SmallestZoomFactor = -7; // -7 is the smallest where the shapes scale decently well | ||
| private static final int DefaultZoomFactor = 0; | ||
| private static final int LargestZoomFactor = 0; | ||
| private int zoomFactor = DefaultZoomFactor; | ||
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| // by default the shapes are editable and their border and text is black / gray, aso | ||
| // otherwise they are a shade of brown, very much alike the DefaultScrollTableCellRenderer.uneditableForeground | ||
| private boolean editable = true; | ||
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| // public void setShowMoleculeColor(boolean bShowMoleculeColor) { | ||
| // this.bShowMoleculeColor = bShowMoleculeColor; | ||
| // } | ||
| // public void setShowNonTrivialOnly(boolean bShowNonTrivialOnly) { | ||
| // this.bShowNonTrivialOnly = bShowNonTrivialOnly; | ||
| // } | ||
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| public boolean zoomLarger() { // returns false when upper limit was reached | ||
| zoomFactor++; | ||
| if(zoomFactor >= LargestZoomFactor) { | ||
| zoomFactor = LargestZoomFactor; | ||
| System.out.println("MAX. Factor is " + zoomFactor); | ||
| return false; | ||
| } else { | ||
| System.out.println("Up. Factor is " + zoomFactor); | ||
| return true; | ||
| } | ||
| } | ||
| public void setZoomFactor(int newZoomFactor) { | ||
| if(newZoomFactor > LargestZoomFactor || newZoomFactor < SmallestZoomFactor) { | ||
| throw new RuntimeException("Large Shape Panel zoom factor is out of bounds"); | ||
| } | ||
| zoomFactor = newZoomFactor; | ||
| } | ||
| public boolean zoomSmaller() { // returns false when lower limit was reached | ||
| zoomFactor--; | ||
| if(zoomFactor <= SmallestZoomFactor) { | ||
| zoomFactor = SmallestZoomFactor; | ||
| System.out.println("MIN. Factor is " + zoomFactor); | ||
| return false; | ||
| } else { | ||
| System.out.println("Down. Factor is " + zoomFactor); | ||
| return true; | ||
| } | ||
| } | ||
| public boolean isLargestZoomFactor() { | ||
| return zoomFactor >= LargestZoomFactor ? true : false; | ||
| } | ||
| public boolean isSmallestZoomFactor() { | ||
| return zoomFactor <= SmallestZoomFactor ? true : false; | ||
| } | ||
| public int getZoomFactor() { | ||
| return zoomFactor; | ||
| } | ||
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| public void setEditable(boolean editable) { | ||
| this.editable = editable; | ||
| } | ||
| public boolean isEditable() { | ||
| return editable; | ||
| } | ||
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| } |
226 changes: 226 additions & 0 deletions
226
vcell-client/src/main/java/cbit/vcell/mapping/gui/MolecularStructuresPropertiesPanel.java
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,226 @@ | ||
| package cbit.vcell.mapping.gui; | ||
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| import cbit.vcell.biomodel.BioModel; | ||
| import cbit.vcell.client.desktop.biomodel.DocumentEditorSubPanel; | ||
| import cbit.vcell.graph.PointLocationInShapeContext; | ||
| import cbit.vcell.graph.SpeciesPatternLargeShape; | ||
| import cbit.vcell.graph.gui.LargeShapePanel; | ||
| import cbit.vcell.graph.gui.SsldLargeShapePanel; | ||
| import cbit.vcell.graph.gui.ZoomShapeIcon; | ||
| import cbit.vcell.mapping.LangevinSpeciesContextSpec; | ||
| import cbit.vcell.mapping.SpeciesContextSpec; | ||
| import cbit.vcell.model.Model; | ||
| import cbit.vcell.model.SpeciesContext; | ||
| import cbit.vcell.parser.ExpressionException; | ||
| import org.vcell.model.rbm.SpeciesPattern; | ||
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| import javax.swing.*; | ||
| import java.awt.*; | ||
| import java.awt.event.ActionListener; | ||
| import java.awt.event.MouseEvent; | ||
| import java.awt.event.MouseMotionAdapter; | ||
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| public class MolecularStructuresPropertiesPanel extends DocumentEditorSubPanel { | ||
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| private BioModel bioModel = null; | ||
| private SpeciesContext speciesContext = null; | ||
| private EventHandler eventHandler = new EventHandler(); | ||
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| private JScrollPane scrollPane; // shapePanel lives inside this | ||
| private SpeciesPatternLargeShape spls; // make the real thing | ||
| private SsldLargeShapePanel shapePanel = null; | ||
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| private JButton zoomLargerButton = null; | ||
| private JButton zoomSmallerButton = null; | ||
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| private class EventHandler implements ActionListener { | ||
| public void actionPerformed(java.awt.event.ActionEvent e) { | ||
| if (e.getSource() == getZoomLargerButton()) { | ||
| boolean ret = shapePanel.zoomLarger(); | ||
| getZoomLargerButton().setEnabled(ret); | ||
| getZoomSmallerButton().setEnabled(true); | ||
| updateShape(); | ||
| } else if (e.getSource() == getZoomSmallerButton()) { | ||
| boolean ret = shapePanel.zoomSmaller(); | ||
| getZoomLargerButton().setEnabled(true); | ||
| getZoomSmallerButton().setEnabled(ret); | ||
| updateShape(); | ||
| } | ||
| } | ||
| } | ||
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| public MolecularStructuresPropertiesPanel() { | ||
| super(); | ||
| initialize(); | ||
| } | ||
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| private void handleException(Throwable exception) { | ||
| /* Uncomment the following lines to print uncaught exceptions to stdout */ | ||
| if (exception instanceof ExpressionException){ | ||
| javax.swing.JOptionPane.showMessageDialog(this, exception.getMessage(), "Error", javax.swing.JOptionPane.ERROR_MESSAGE); | ||
| } | ||
| System.out.println("--------- UNCAUGHT EXCEPTION --------- in SpeciesContextSpecPanel"); | ||
| exception.printStackTrace(System.out); | ||
| } | ||
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| private void initialize() { | ||
| try { | ||
| shapePanel = new SsldLargeShapePanel() { // glyph (shape) panel | ||
| @Override | ||
| public void paintComponent(Graphics g) { | ||
| super.paintComponent(g); | ||
| if (spls != null) { | ||
| spls.paintSelf(g); | ||
| } | ||
| } | ||
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| }; | ||
| shapePanel.addMouseMotionListener(new MouseMotionAdapter() { | ||
| public void mouseMoved(MouseEvent e) { | ||
| Point overWhat = e.getPoint(); | ||
| PointLocationInShapeContext locationContext = new PointLocationInShapeContext(overWhat); | ||
| spls.contains(locationContext); | ||
| shapePanel.setToolTipText("View-Only panel"); | ||
| } | ||
| }); | ||
| shapePanel.setBackground(new Color(0xe0e0e0)); | ||
| shapePanel.setZoomFactor(-2); | ||
| shapePanel.setEditable(false); | ||
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| scrollPane = new JScrollPane(shapePanel); | ||
| scrollPane.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED); | ||
| scrollPane.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED); | ||
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| // ----------------------------------------------------------------------------------------- | ||
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| JPanel optionsPanel = new JPanel(); // ------- left panel with zoom buttons | ||
| optionsPanel.setLayout(new GridBagLayout()); | ||
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| getZoomSmallerButton().setEnabled(true); | ||
| getZoomLargerButton().setEnabled(true); | ||
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| GridBagConstraints gbc = new GridBagConstraints(); | ||
| gbc.gridx = 0; | ||
| gbc.gridy = 0; | ||
| gbc.insets = new Insets(4,4,0,10); | ||
| gbc.anchor = GridBagConstraints.WEST; | ||
| optionsPanel.add(getZoomLargerButton(), gbc); | ||
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| gbc = new GridBagConstraints(); | ||
| gbc.gridx = 0; | ||
| gbc.gridy = 1; | ||
| gbc.insets = new Insets(4,4,4,10); | ||
| gbc.anchor = GridBagConstraints.WEST; | ||
| optionsPanel.add(getZoomSmallerButton(), gbc); | ||
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| gbc = new GridBagConstraints(); | ||
| gbc.gridx = 0; | ||
| gbc.gridy = 2; | ||
| gbc.weightx = 1; | ||
| gbc.weighty = 1; // fake cell used for filling all the vertical empty space | ||
| gbc.anchor = GridBagConstraints.WEST; | ||
| gbc.insets = new Insets(4, 4, 4, 10); | ||
| optionsPanel.add(new JLabel(""), gbc); | ||
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| // ------------------------------------------------------------------------------------------ | ||
| JPanel containerOfScrollPanel = new JPanel(); | ||
| containerOfScrollPanel.setLayout(new BorderLayout()); | ||
| containerOfScrollPanel.add(optionsPanel, BorderLayout.WEST); | ||
| containerOfScrollPanel.add(scrollPane, BorderLayout.CENTER); | ||
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| setLayout(new BorderLayout()); | ||
| add(containerOfScrollPanel, BorderLayout.CENTER); | ||
| setBackground(Color.white); | ||
| setName("MolecularStructuresPropertiesPanel"); | ||
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| } catch (java.lang.Throwable ivjExc) { | ||
| handleException(ivjExc); | ||
| } | ||
| } | ||
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| private void updateInterface() { | ||
| if(speciesContext == null) { | ||
| return; | ||
| } | ||
| updateShape(); | ||
| } | ||
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| public static final int xOffsetInitial = 20; | ||
| public static final int yOffsetInitial = 10; | ||
| private void updateShape() { | ||
| if(speciesContext == null) { | ||
| return; | ||
| } | ||
| SpeciesPattern sp = speciesContext.getSpeciesPattern(); | ||
| // spls = new SpeciesPatternLargeShape(xOffsetInitial, yOffsetInitial, -1, sp, shapePanel, speciesContext, issueManager); | ||
| // | ||
| // Dimension preferredSize = new Dimension(spls.getRightEnd()+40, yOffsetInitial+80); | ||
| // shapePanel.setPreferredSize(preferredSize); | ||
| // shapePanel.repaint(); | ||
| } | ||
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| public void setSpeciesContextSpec(SpeciesContextSpec scSpec) { | ||
| if(scSpec == null) { | ||
| this.speciesContext = null; | ||
| } else { | ||
| this.speciesContext = scSpec.getSpeciesContext(); | ||
| } | ||
| // getSpeciesContextSpecParameterTableModel().setSpeciesContextSpec(scSpec); | ||
| updateInterface(); | ||
| } | ||
| public void setBioModel(BioModel newValue) { | ||
| if (bioModel == newValue) { | ||
| return; | ||
| } | ||
| bioModel = newValue; | ||
| if(bioModel == null) { | ||
| return; | ||
| } | ||
| Model model = bioModel.getModel(); | ||
| if(model != null & model.getRbmModelContainer().getMolecularTypeList().size() > 0) { | ||
| // splitPaneHorizontal.setDividerLocation(165); | ||
| } else { | ||
| // since we have no molecular types we initialize a much smaller shape panel | ||
| // because we can only show a trivial shape (circle) | ||
| // splitPaneHorizontal.setDividerLocation(195); | ||
| } | ||
| } | ||
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| @Override | ||
| protected void onSelectedObjectsChange(Object[] selectedObjects) { | ||
| SpeciesContextSpec speciesContextSpec = null; | ||
| if (selectedObjects != null && selectedObjects.length == 1 && selectedObjects[0] instanceof LangevinSpeciesContextSpec) { | ||
| LangevinSpeciesContextSpec lscs = (LangevinSpeciesContextSpec)selectedObjects[0]; | ||
| speciesContextSpec = lscs.getTheSpeciesContextSpec(); | ||
| } | ||
| setSpeciesContextSpec(speciesContextSpec); | ||
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| } | ||
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| private JButton getZoomLargerButton() { | ||
| if (zoomLargerButton == null) { | ||
| zoomLargerButton = new JButton(); // "+" | ||
| // ResizeCanvasShape.setCanvasNormalMod(zoomLargerButton, ResizeCanvasShape.Sign.expand); | ||
| ZoomShapeIcon.setZoomMod(zoomLargerButton, ZoomShapeIcon.Sign.plus); | ||
| zoomLargerButton.addActionListener(eventHandler); | ||
| } | ||
| return zoomLargerButton; | ||
| } | ||
| private JButton getZoomSmallerButton() { | ||
| if (zoomSmallerButton == null) { | ||
| zoomSmallerButton = new JButton(); // - | ||
| // ResizeCanvasShape.setCanvasNormalMod(zoomSmallerButton, ResizeCanvasShape.Sign.shrink); | ||
| ZoomShapeIcon.setZoomMod(zoomSmallerButton, ZoomShapeIcon.Sign.minus); | ||
| zoomSmallerButton.addActionListener(eventHandler); | ||
| } | ||
| return zoomSmallerButton; | ||
| } | ||
| } |
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