0.4.0
Implemented enhancements:
- Dropping unnecessary columns #21
- Adding support for all official ENA checklists #20
- Possibility to give the taxon_id through the table #6
Closed issues:
- Library name generation #23
Merged pull requests:
- Taxon ID parsing improvements #27 (bedroesb)
- Adding support for all official sample checklists on ENA #26 (bedroesb)
- Taking away the need to give columns that are automatically filled in by the tool #25 (bedroesb)
- Allow to skip file upload and provide a file of filenames as source for data files #24 (mobilegenome)
- Adding support for multiple checklists #19 (bedroesb)
- Read md5sum from table, and only generate if missing #18 (mobilegenome)
- Add ENA_template_ERC000011_sample.xml #17 (rabuono)
- Small fixes based on #15 #16 (bedroesb)
NOTE: This release is not backwards compatible with previous release! Check following things if you update from 0.3.1 or earlier:
- Headers in the sample table will now follow the exact vocabulary as on ENA
- The
--virparameter is not supported anymore and is replaced by--checklist ERC000033+ support for all official checklists - The scientific_name column in the sample table is not mandatory anymore + the taxon_id column is recommended instead
- Sample columns accession,submission_date, status are not needed anymore