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@umccr

UMCCR

University of Melbourne Centre for Cancer Research

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  1. htsget-rs htsget-rs Public

    A server implementation of the htsget protocol for bioinformatics in Rust

    Rust 40 9

  2. infrastructure infrastructure Public

    Infrastructure as Code at UMCCR

    Python 10 8

  3. cwl-ica cwl-ica Public

    A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide

    Common Workflow Language 9 2

  4. data-portal-apis data-portal-apis Public

    UMCCR Data Portal API Backend in cloud native serverless

    Python 1

  5. orcabus orcabus Public

     🐋 UMCCR Pipeline & Workflow Orchestration

    Python 4

  6. RNAsum RNAsum Public

    Pipeline for generating RNAseq-based cancer patient reports

    R 7 4

Repositories

Showing 10 of 94 repositories
  • orcabus Public

     🐋 UMCCR Pipeline & Workflow Orchestration

    umccr/orcabus’s past year of commit activity
    Python 4 0 53 (1 issue needs help) 6 Updated Dec 20, 2024
  • rems-umccr Public

    A Docker image of REMS built for deployment in AWS and setup for UMCCR configuration

    umccr/rems-umccr’s past year of commit activity
    TypeScript 0 MIT 0 0 2 Updated Dec 19, 2024
  • orca-ui Public
    umccr/orca-ui’s past year of commit activity
    TypeScript 0 MIT 0 18 (1 issue needs help) 1 Updated Dec 19, 2024
  • htsget-rs Public

    A server implementation of the htsget protocol for bioinformatics in Rust

    umccr/htsget-rs’s past year of commit activity
    Rust 40 MIT 9 20 9 Updated Dec 18, 2024
  • holmes Public

    BAM fingerprint stack

    umccr/holmes’s past year of commit activity
    TypeScript 3 MIT 0 3 1 Updated Dec 18, 2024
  • orcahouse Public

    🐳 UMCCR Pipeline & Workflow Data Warehouse

    umccr/orcahouse’s past year of commit activity
    HCL 0 0 0 0 Updated Dec 18, 2024
  • data-portal-client Public

    UMCCR Data Portal Frontend

    umccr/data-portal-client’s past year of commit activity
    TypeScript 1 1 6 3 Updated Dec 18, 2024
  • gene_panels Public
    umccr/gene_panels’s past year of commit activity
    R 0 0 1 0 Updated Dec 17, 2024
  • dracarys Public

    🐲 DRAGEN workflow tidying 🔥

    umccr/dracarys’s past year of commit activity
    R 0 0 26 0 Updated Dec 17, 2024
  • RNAsum Public

    Pipeline for generating RNAseq-based cancer patient reports

    umccr/RNAsum’s past year of commit activity
    R 7 4 16 0 Updated Dec 17, 2024