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Merge branch 'develop' into feature/pio_options
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@DeniseWorthen
DeniseWorthen committed Apr 4, 2024
2 parents 9105292 + 26e6db6 commit 9493502
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Showing 49 changed files with 2,379 additions and 2,104 deletions.
8 changes: 5 additions & 3 deletions .github/workflows/aux.yml
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Expand Up @@ -30,16 +30,18 @@ jobs:
steps:
- name: Check up-to-dateness and post comment
run: |
head_sha=${{ github.event.workflow_run.head_sha }}
git clone -q ${{ github.event.workflow_run.head_repository.html_url }} .
head_sha=${{ github.event.pull_request.head.sha }}
head_brc=${{ github.event.pull_request.head.ref }}
head_url=${{ github.event.pull_request.head.repo.html_url }}
git clone -q -b $head_brc $head_url .
git checkout -q $head_sha
git submodule -q update --init --recursive
cd ${{ github.workspace }}/tests/ci
url=$GITHUB_API_URL/repos/$GITHUB_REPOSITORY
pr_number=$(curl -sS -H $app $url/pulls \
| jq -r '.[] | select(.head.sha == "'"$head_sha"'") | .number')
echo "pr_number is $pr_number"
pr_uid=${{ github.event.workflow_run.head_repository.owner.login }}
pr_uid=${{ github.event.pull_request.head.repo.owner.login }}
echo "pr_uid is $pr_uid"
comment="$(./repo_check.sh $pr_uid 2>/dev/null)"
echo "comment is $comment"
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2 changes: 1 addition & 1 deletion CICE-interface/CICE
Submodule CICE updated 2 files
+39 −47 cicecore/drivers/nuopc/cmeps/ice_import_export.F90
+3 −1 cicecore/drivers/nuopc/cmeps/ice_prescribed_mod.F90
2 changes: 1 addition & 1 deletion CMEPS-interface/CMEPS
Submodule CMEPS updated 8 files
+35 −14 cesm/driver/esm.F90
+30 −10 mediator/med.F90
+3 −3 mediator/med_fraction_mod.F90
+6 −2 mediator/med_internalstate_mod.F90
+20 −21 mediator/med_io_mod.F90
+55 −51 mediator/med_map_mod.F90
+17 −31 mediator/med_phases_history_mod.F90
+4 −0 mediator/med_phases_restart_mod.F90
2 changes: 1 addition & 1 deletion FV3
Submodule FV3 updated 7 files
+1 −0 CMakeLists.txt
+29 −25 atmos_model.F90
+0 −1 cpl/module_cap_cpl.F90
+25 −17 cpl/module_cplfields.F90
+203 −0 cpl/module_cplscalars.F90
+53 −2 fv3_cap.F90
+25 −1 module_fcst_grid_comp.F90
7 changes: 4 additions & 3 deletions NOAHMP-interface/CMakeLists.txt
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Expand Up @@ -8,9 +8,10 @@ list(APPEND _noahmp_cap_files noahmp/drivers/nuopc/lnd_comp_kind.F90
noahmp/drivers/nuopc/lnd_comp_domain.F90
noahmp/drivers/nuopc/lnd_comp_import_export.F90
noahmp/drivers/nuopc/lnd_comp_nuopc.F90
noahmp/drivers/nuopc/lnd_comp_driver.F90)
noahmp/drivers/nuopc/lnd_comp_driver.F90
noahmp/drivers/nuopc/lnd_comp_cplscalars.F90)

# CCPP interface
# CCPP interface
list(APPEND _noahmp_ccpp_files noahmp/drivers/ccpp/noahmpdrv.F90
noahmp/drivers/ccpp/sfc_diff.f
noahmp/drivers/ccpp/machine.F
Expand All @@ -25,7 +26,7 @@ list(APPEND _noahmp_files noahmp/src/module_sf_noahmplsm.F90
noahmp/src/module_sf_noahmp_glacier.F90)

#------------------------------------------------------------------------------
# Set CCPP flags for C/C++/Fortran preprocessor
# Set CCPP flags for C/C++/Fortran preprocessor
add_definitions(-DCCPP)

#------------------------------------------------------------------------------
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2 changes: 1 addition & 1 deletion NOAHMP-interface/noahmp
Submodule noahmp updated 4 files
+4 −3 CMakeLists.txt
+192 −0 drivers/nuopc/lnd_comp_cplscalars.F90
+78 −34 drivers/nuopc/lnd_comp_import_export.F90
+59 −8 drivers/nuopc/lnd_comp_nuopc.F90
2 changes: 1 addition & 1 deletion tests/bl_date.conf
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@@ -1 +1 @@
export BL_DATE=20240315
export BL_DATE=20240401
1 change: 0 additions & 1 deletion tests/default_vars.sh
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Expand Up @@ -843,7 +843,6 @@ export_ww3

# Set CMEPS component defauls
export_cmeps
export ATMTILESIZE=`expr $NPX - 1`

# FV3 defaults
export FRAC_GRID=.true.
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48 changes: 24 additions & 24 deletions tests/logs/OpnReqTests_control_p8_hera.log
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@@ -1,9 +1,9 @@
Mon Apr 1 12:58:41 UTC 2024
Wed Apr 3 13:03:42 UTC 2024
Start Operation Requirement Test


baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_bit_base_gnu
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_3809779/bit_base_bit_base
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1734208/bit_base_bit_base
Checking test bit_base results ....
Moving baseline bit_base files ....
Moving sfcf000.nc .........OK
Expand Down Expand Up @@ -51,14 +51,14 @@ Moving baseline bit_base files ....
Moving RESTART/20210323.060000.sfc_data.tile5.nc .........OK
Moving RESTART/20210323.060000.sfc_data.tile6.nc .........OK

0: The total amount of wall time = 268.251032
0: The maximum resident set size (KB) = 1265156
0: The total amount of wall time = 270.499708
0: The maximum resident set size (KB) = 1267976

Test bit_base PASS


baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_dbg_base_gnu
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_3809779/dbg_base_dbg_base
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1734208/dbg_base_dbg_base
Checking test dbg_base results ....
Moving baseline dbg_base files ....
Moving sfcf000.nc .........OK
Expand Down Expand Up @@ -106,14 +106,14 @@ Moving baseline dbg_base files ....
Moving RESTART/20210323.060000.sfc_data.tile5.nc .........OK
Moving RESTART/20210323.060000.sfc_data.tile6.nc .........OK

0: The total amount of wall time = 965.834768
0: The maximum resident set size (KB) = 1256504
0: The total amount of wall time = 949.421879
0: The maximum resident set size (KB) = 1254204

Test dbg_base PASS


baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_3809779/dcp_dcp
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1734208/dcp_dcp
Checking test dcp results ....
Comparing sfcf000.nc .....USING NCCMP......OK
Comparing sfcf021.nc .....USING NCCMP......OK
Expand Down Expand Up @@ -160,14 +160,14 @@ Checking test dcp results ....
Comparing RESTART/20210323.060000.sfc_data.tile5.nc .....USING NCCMP......OK
Comparing RESTART/20210323.060000.sfc_data.tile6.nc .....USING NCCMP......OK

0: The total amount of wall time = 246.586805
0: The maximum resident set size (KB) = 1233548
0: The total amount of wall time = 238.203503
0: The maximum resident set size (KB) = 1247000

Test dcp PASS


baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_3809779/mpi_mpi
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1734208/mpi_mpi
Checking test mpi results ....
Comparing sfcf000.nc .....USING NCCMP......OK
Comparing sfcf021.nc .....USING NCCMP......OK
Expand Down Expand Up @@ -214,14 +214,14 @@ Checking test mpi results ....
Comparing RESTART/20210323.060000.sfc_data.tile5.nc .....USING NCCMP......OK
Comparing RESTART/20210323.060000.sfc_data.tile6.nc .....USING NCCMP......OK

0: The total amount of wall time = 235.970450
0: The maximum resident set size (KB) = 1247740
0: The total amount of wall time = 238.209192
0: The maximum resident set size (KB) = 1246248

Test mpi PASS


baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_3809779/rst_rst
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1734208/rst_rst
Checking test rst results ....
Comparing sfcf000.nc .....USING NCCMP......OK
Comparing sfcf021.nc .....USING NCCMP......OK
Expand Down Expand Up @@ -268,14 +268,14 @@ Checking test rst results ....
Comparing RESTART/20210323.060000.sfc_data.tile5.nc .....USING NCCMP......OK
Comparing RESTART/20210323.060000.sfc_data.tile6.nc .....USING NCCMP......OK

0: The total amount of wall time = 242.245564
0: The maximum resident set size (KB) = 1242900
0: The total amount of wall time = 239.223169
0: The maximum resident set size (KB) = 1247272

Test rst PASS


baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_3809779/std_base_std_base
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1734208/std_base_std_base
Checking test std_base results ....
Moving baseline std_base files ....
Moving sfcf000.nc .........OK
Expand Down Expand Up @@ -323,14 +323,14 @@ Moving baseline std_base files ....
Moving RESTART/20210323.060000.sfc_data.tile5.nc .........OK
Moving RESTART/20210323.060000.sfc_data.tile6.nc .........OK

0: The total amount of wall time = 237.390294
0: The maximum resident set size (KB) = 1248812
0: The total amount of wall time = 242.202633
0: The maximum resident set size (KB) = 1247172

Test std_base PASS


baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/control_p8_std_base_gnu
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_3809779/thr_thr
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1734208/thr_thr
Checking test thr results ....
Comparing sfcf000.nc .....USING NCCMP......OK
Comparing sfcf021.nc .....USING NCCMP......OK
Expand Down Expand Up @@ -377,11 +377,11 @@ Checking test thr results ....
Comparing RESTART/20210323.060000.sfc_data.tile5.nc .....USING NCCMP......OK
Comparing RESTART/20210323.060000.sfc_data.tile6.nc .....USING NCCMP......OK

0: The total amount of wall time = 242.382720
0: The maximum resident set size (KB) = 1242900
0: The total amount of wall time = 242.018158
0: The maximum resident set size (KB) = 1247888

Test thr PASS

OPERATION REQUIREMENT TEST WAS SUCCESSFUL
Mon Apr 1 14:07:52 UTC 2024
Elapsed time: 01h:09m:14s. Have a nice day!
Wed Apr 3 14:13:02 UTC 2024
Elapsed time: 01h:09m:20s. Have a nice day!
22 changes: 11 additions & 11 deletions tests/logs/OpnReqTests_cpld_control_nowave_noaero_p8_hera.log
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Original file line number Diff line number Diff line change
@@ -1,9 +1,9 @@
Mon Apr 1 18:08:14 UTC 2024
Wed Apr 3 18:01:51 UTC 2024
Start Operation Requirement Test


baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_dbg_base_gnu
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_4186917/dbg_base_dbg_base
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1612891/dbg_base_dbg_base
Checking test dbg_base results ....
Moving baseline dbg_base files ....
Moving sfcf021.tile1.nc .........OK
Expand Down Expand Up @@ -66,14 +66,14 @@ Moving baseline dbg_base files ....
Moving RESTART/iced.2021-03-23-21600.nc .........OK
Moving RESTART/ufs.cpld.cpl.r.2021-03-23-21600.nc .........OK

0: The total amount of wall time = 1299.447405
0: The maximum resident set size (KB) = 1367532
0: The total amount of wall time = 1309.881667
0: The maximum resident set size (KB) = 1366736

Test dbg_base PASS


baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_std_base_gnu
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_4186917/rst_rst
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1612891/rst_rst
Checking test rst results ....
Comparing sfcf021.tile1.nc .....USING NCCMP......OK
Comparing sfcf021.tile2.nc .....USING NCCMP......OK
Expand Down Expand Up @@ -135,14 +135,14 @@ Checking test rst results ....
Comparing RESTART/iced.2021-03-23-21600.nc .....USING NCCMP......OK
Comparing RESTART/ufs.cpld.cpl.r.2021-03-23-21600.nc .....USING NCCMP......OK

0: The total amount of wall time = 604.635134
0: The maximum resident set size (KB) = 1359688
0: The total amount of wall time = 385.164336
0: The maximum resident set size (KB) = 1359652

Test rst PASS


baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_std_base_gnu
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_4186917/std_base_std_base
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1612891/std_base_std_base
Checking test std_base results ....
Moving baseline std_base files ....
Moving sfcf021.tile1.nc .........OK
Expand Down Expand Up @@ -205,11 +205,11 @@ Moving baseline std_base files ....
Moving RESTART/iced.2021-03-23-21600.nc .........OK
Moving RESTART/ufs.cpld.cpl.r.2021-03-23-21600.nc .........OK

0: The total amount of wall time = 385.824022
0: The maximum resident set size (KB) = 1360152
0: The total amount of wall time = 386.874326
0: The maximum resident set size (KB) = 1362372

Test std_base PASS

OPERATION REQUIREMENT TEST WAS SUCCESSFUL
Mon Apr 1 19:12:24 UTC 2024
Wed Apr 3 19:06:01 UTC 2024
Elapsed time: 01h:04m:10s. Have a nice day!
24 changes: 12 additions & 12 deletions tests/logs/OpnReqTests_regional_control_hera.log
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@@ -1,9 +1,9 @@
Mon Apr 1 16:00:46 UTC 2024
Wed Apr 3 15:46:00 UTC 2024
Start Operation Requirement Test


baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/regional_control_std_base_gnu
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_3322710/dcp_dcp
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1137011/dcp_dcp
Checking test dcp results ....
Comparing dynf000.nc .....USING NCCMP......OK
Comparing dynf006.nc .....USING NCCMP......OK
Expand All @@ -14,14 +14,14 @@ Checking test dcp results ....
Comparing NATLEV.GrbF00 .....USING CMP......OK
Comparing NATLEV.GrbF06 .....USING CMP......OK

0: The total amount of wall time = 2150.095224
0: The maximum resident set size (KB) = 553404
0: The total amount of wall time = 2148.497446
0: The maximum resident set size (KB) = 557116

Test dcp PASS


baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/regional_control_std_base_gnu
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_3322710/std_base_std_base
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1137011/std_base_std_base
Checking test std_base results ....
Moving baseline std_base files ....
Moving dynf000.nc .........OK
Expand All @@ -33,14 +33,14 @@ Moving baseline std_base files ....
Moving NATLEV.GrbF00 .........OK
Moving NATLEV.GrbF06 .........OK

0: The total amount of wall time = 2151.572064
0: The maximum resident set size (KB) = 563124
0: The total amount of wall time = 2165.195419
0: The maximum resident set size (KB) = 563120

Test std_base PASS


baseline dir = /scratch1/NCEPDEV/stmp4/Zachary.Shrader/FV3_OPNREQ_TEST/OPNREQ_TEST/regional_control_std_base_gnu
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_3322710/thr_thr
working dir = /scratch1/NCEPDEV/stmp2/Zachary.Shrader/FV3_OPNREQ_TEST/opnReqTest_1137011/thr_thr
Checking test thr results ....
Comparing dynf000.nc .....USING NCCMP......OK
Comparing dynf006.nc .....USING NCCMP......OK
Expand All @@ -51,11 +51,11 @@ Checking test thr results ....
Comparing NATLEV.GrbF00 .....USING CMP......OK
Comparing NATLEV.GrbF06 .....USING CMP......OK

0: The total amount of wall time = 2129.213652
0: The maximum resident set size (KB) = 560932
0: The total amount of wall time = 2186.776168
0: The maximum resident set size (KB) = 554324

Test thr PASS

OPERATION REQUIREMENT TEST WAS SUCCESSFUL
Mon Apr 1 17:59:32 UTC 2024
Elapsed time: 01h:58m:47s. Have a nice day!
Wed Apr 3 17:45:29 UTC 2024
Elapsed time: 01h:59m:30s. Have a nice day!
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