[develop] Add AQM to SRW user's guide

[chan-hoo]

DESCRIPTION OF CHANGES:

• Add documentation for Air Quality Modeling (AQM) to the user's guide.

Type of change

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to not work as expected)
• This change requires a documentation update

TESTS CONDUCTED:

• This is an update only for doc.
• hera.intel
• orion.intel
• cheyenne.intel
• cheyenne.gnu
• gaea.intel
• jet.intel
• wcoss2.intel
• NOAA Cloud (indicate which platform)
• Jenkins
• fundamental test suite
• comprehensive tests (specify which if a subset was used)

ISSUE:

Fixes issue mentioned in #625

CHECKLIST

• My code follows the style guidelines in the Contributor's Guide
• I have performed a self-review of my own code using the Code Reviewer's Guide
• I have commented my code, particularly in hard-to-understand areas
• My changes need updates to the documentation. I have made corresponding changes to the documentation
• My changes do not require updates to the documentation (explain).
• My changes generate no new warnings
• New and existing tests pass with my changes
• Any dependent changes have been merged and published

LABELS:

• Work In Progress
• bug
• enhancement
• documentation
• release
• high priority
• run_ci
• run_we2e_fundamental_tests
• run_we2e_comprehensive_tests
• Needs Cheyenne test
• Needs Jet test
• Needs Hera test
• Needs Orion test
• help wanted

CONTRIBUTORS:

[chan-hoo]

@gspetro-NOAA, could you let me know how I can test this change in the doc?

[MichaelLueken]

@chan-hoo I was able to use readthedocs to build the updated User's Guide in your branch:

https://mikes-ufs-srweather-app-fork.readthedocs.io/en/feature-aqm_doc/AQM.html

In my review, I've noted dead links to a table that has been removed as part of this PR, minor spelling issues (code-clock rather than code-block keeping the build method from appearing in the documentation), and adding a ` to the end of the table and figure declarations.

Additionally, we have a new entry in the Code Contributor's Guide about not allowing binary files into be merged to the authoritative repository. You might want to reach out to @gspetro-NOAA for additional information on how to stage the file on the SRW App's wiki and then point to it in the AQM.rst file.

[chan-hoo]

@MichaelLueken, thanks for the fix. I've updated it. @gspetro-NOAA, regarding @MichaelLueken's comment about a binary file, could you let me know how to resolve this issue?

[MichaelLueken]

@chan-hoo Table 7.2 still isn't appearing in the users guide. Adding a line between lines 238 and 239 allows the table to be generated and adds the table link on line 234.

[MichaelLueken]

@chan-hoo One last update with respect to changing regional_workflow to workflow_tools, line 54 is still using regional_workflow, so it would be best to replace this as well.

Once this has been completed, I think that the only issue will be dealing with the binary file and ensuring that it shows up in the User's Guide.

[MichaelLueken]

@chan-hoo There has been issues with the image appearing in rtd. I was able to correct this issue by aligning line 173 with line 172. Once this has been complete, I'll be ready to approve this PR. Thank you very much for working with @gspetro-NOAA and myself to get everything ready for this update to the documentation!

[MichaelLueken]

@chan-hoo Thanks for making the requested modifications! Everything is now appearing correctly in the rtd. Approving now.